Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5042 192 1e-43 >seq5042 Length=7215 Score = 192 bits (212), Expect = 1e-43 Identities = 502/758 (66%), Gaps = 11/758 (1%) Strand=Plus/Minus Query 42391 CTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450 |||| ||||||| | ||| |||| ||||| || ||||||||||| ||| || || | Sbjct 6138 CTGATAACGAAAGATATTTTATCAAGAACATCCTCGCCTTCTTCGCTGCCAGCGATGGTA 6079 Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA--GAGGTGCAGTACTTTGAGGCGCG 42508 | ||||| || ||||| | | ||| || || || || || || | ||| || || Sbjct 6078 TCGTCAACGAAAACCTCGTCGCCAACTT--TGGAACTGAAGTCCAAATCCCTGAAGCCCG 6021 Query 42509 CTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACT 42568 ||| || || || ||||| || || || ||| | ||| ||| ||||| ||| || Sbjct 6020 CTGTTTTTATGGTTTCCAAATTATGATTGAAAACATCCACAGTGAAATGTACTCCATGCT 5961 Query 42569 GCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 | | || |||||| ||| ||| || | || || |||| ||| | | | Sbjct 5960 TATTGATACTTACATCAAAGATAACGTTGAAAGAGACTTCCTACTCAACGCCGTTCAAAA 5901 Query 42629 GATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA-GAGTCCCGACG 42687 || |||||||| ||||| ||||| ||||||| || | ||||| || || || || Sbjct 5900 CATCCCCTGCATTAAGAAAAAGGCTAACTGGGCTCTTGAGTGGATTGATGACTCTA-ACA 5842 Query 42688 CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCG 42747 || || ||||| || |||| || ||| | ||| || |||||||||||| ||| Sbjct 5841 AAAGCTTTGGCGAAAGACTGGCTGCTTTTTGTGTCGTTGAAGGCATCTTCTTCAGTGGCT 5782 Query 42748 CCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCG 42806 | || ||| |||||||||||||||| || || || |||||||| || || ||||| Sbjct 5781 CTTTTGCCGCCATCTTCTGGCTCAAAAAGCGTGGCCTC-ATGCCCGGTCTTACTTTCTCC 5723 Query 42807 AACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCG 42866 |||||||| ||| | || ||||| || || || | || |||| |||||| ||||| Sbjct 5722 AACGAACTTATCTGTAGAGACGAAGGTCTTCACACCGATTTTGGCTGCCTATTGTTC--- 5666 Query 42867 AGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTG 42926 | |||||| |||||||||| | || | |||||| | | |||||||| Sbjct 5665 AAATACCTCATCAACAAGCCCTCTGAAGAAAAAATATTAGCCATCGTTGCTGAGGCCGTT 5606 Query 42927 GAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCAC 42986 ||||| | || ||| | || | || || || || ||||| | || ||||| | Sbjct 5605 ACCATCGAACAAGAATTCTTAACTGACTCACTACCTGTCTCCCTAATAGGAATGAATAGC 5546 Query 42987 GACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTC 43046 | | |||| | |||| ||| | | || || |||| | | || | | ||| || Sbjct 5545 AAATTAATGTCCCAGTATATCGAATTTGTTGCTGACCGTTTACTTTTGTCTCTAGGTTTC 5486 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 ||| | || || | ||| ||||| || ||||| | ||||| || | ||| Sbjct 5485 AGCAAACATTATCACGTCACTAACCCATTCGATTTCATGGATATGATCTCTATGCAAGGC 5426 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 || || || || || || |||||||| ||||||||| Sbjct 5425 AAAACTAATTTCTTTGAAAAGCGCGTTAGCGACTACCA 5388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944247728944240