Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq923 131 4e-25 seq5539 125 2e-23 >seq923 Length=21762 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||| | | ||||| |||||||| | ||||| |||||||| Sbjct 10623 TTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCGTCTTCGAGCTGTTTACCTGCGAA 10682 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || ||||| || || |||||||||||| || || ||||||||| || ||||| Sbjct 10683 AATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTT 10742 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || ||||| ||||| || ||||| ||||| || || ||||| ||||| Sbjct 10743 GTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTCTTACCTGTTAGAGTTTTGAC 10802 Query 288462 GAATATCTGCATTATGTTAT 288481 ||| || ||||| ||| || Sbjct 10803 GAAAATTTGCATGTTGTGAT 10822 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||| | | ||||| |||||||| | ||||| |||||||| Sbjct 10395 TTCTTTTTGGATGTTGTAGTCAGATAAAGTGCGGCCGTCTTCAAGCTGTTTACCTGCGAA 10454 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || ||||| || || |||||||||||| || || || |||||| || ||||| Sbjct 10455 AATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTCTGCTTGACGTT 10514 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || ||||| ||||| || ||||| ||||| || || || ||||| || Sbjct 10515 GTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTCTTACCTGTAAGGGTCTTTAC 10574 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 10575 GAAAATTTGCAT 10586 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||||||| || || ||||||||| || ||||| || || | || ||||| Sbjct 10248 TGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCAATTGTGTCCGAAGATTC 10307 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || |||||||| |||||||| || ||||| Sbjct 10308 GACTTCAAGGGTGATGGTCTTACCTGTCAGAGTTTTGACGAAAATTTGCAT 10358 >seq5539 Length=6842 Score = 125 bits (138), Expect = 2e-23 Identities = 146/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || || |||| | || || || ||||||| |||||| || ||||| Sbjct 1002 TTCTTTTTGAATGTTGTAATCGGACAAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAA 1061 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| || || ||| ||||| |||||||| ||||| |||||||| ||| || Sbjct 1062 AATCAAGCGTTGCTGA---TCTGGAGGAATTCCTTCCTTATCTTGGATTTTTTGTTTAAC 1118 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || |||||||| ||||||||||| || || || || || || || |||||||| Sbjct 1119 ATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGGTTTTACCTGTAAGAGTCTT 1178 Query 288459 GACGAATATCTGCATT 288474 || || ||||||||| Sbjct 1179 TACAAAAATCTGCATT 1194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179537279118822