Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2634 100 3e-16 >seq2634 Length=12318 Score = 100 bits (110), Expect = 3e-16 Identities = 593/941 (63%), Gaps = 34/941 (4%) Strand=Plus/Minus Query 114463 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 114522 |||||| || || || || | || || |||| || ||||| ||||| || | Sbjct 8632 AGGAAGAGCAATAGAGGCTAAGTTGCAAACAGCAACTTCGTCCTTGGAGGTGTATTCAAC 8573 Query 114523 AATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 114582 ||||| || || | ||||| || ||||| || || | ||| | ||| || || || Sbjct 8572 GATTTCAGTGCAAAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTGCC 8513 Query 114583 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 114642 |||||| || || ||||| ||||||||||| || || || || ||||||| | | ||| Sbjct 8512 GTTACAAGCGTCTTTGTAGAGCATGTATGGAGTTCCAGTTTCGATTTGGGAATCTAAAAT 8453 Query 114643 AGCCTTCCAGACATCGGCGGCTGGCACAGTG--GCGTTGGC----TCGCCCCTC---CTC 114693 ||| | ||||| | ||||| ||||| ||||| || | || || | Sbjct 8452 AGCGTACCAGA-----GTTGCTGG-GCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGTT 8399 Query 114694 CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC 114753 ||||| ||| |||||| | || |||| || ||| | || | || || || || Sbjct 8398 TTCGTATTTTAGGTAGAGTTCATCGAACTTCTCGCCCCAAACGTCAGCTAGACCAGGGGC 8339 Query 114754 CTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTC 114813 | || |||||||| | ||||| | ||| ||| ||| || |||||| ||||| Sbjct 8338 TTCATGGGGGCAGAATAATGACCAGTCACCGTTTTCCAAAACGCGGCGCATGAAAAGGTC 8279 Query 114814 TGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAG 114873 || ||||| ||| | |||| | || || ||| |||||| | || ||||| Sbjct 8278 AGGAATCCAAAGACCGTAGAACAAGTCACGGGCACGATTTTCTTCTTTACCGTGATTTTT 8219 Query 114874 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 114933 | | | ||||| || | || || || ||||| ||||| ||||| | |||| | Sbjct 8218 TCTTAGGTTTAAAAATTCAAAAATGTCGGCATGCCATGGTTCAAGGTAAATGGCGA-AGG 8160 Query 114934 CCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCG 114987 | ||| |||| || | |||| || || || || || | || ||||| | Sbjct 8159 CGCCT--GGACGTTTGTTGCCGCCTTGGTCGACGTATCTAGCGGTAGTGTTGAATACTTG 8102 Query 114988 AAGCATTGGAATGATACCATCAGATTGGCCATTTG-TCCCCCGA-ATACGAGACTTATTG 115045 |||||||||| || || | || ||||| | ||| ||| || ||| | | | Sbjct 8101 GAGCATTGGAACAATTCCGTTCGAAGTACCATTGGTTCCGGCGATGTAAGAGCC--AGTT 8044 Query 115046 GCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC 115105 || | | || ||||| | |||||| || || || | || ||||||| ||||| Sbjct 8043 GCACGAATATTGTGGATACTTAGACCAATTCCACCAGCAGATTTAGAGATTTTAGCGCAT 7984 Query 115106 TCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAG 115165 | | || | | | || || || ||||| |||||| ||| ||| | || ||| || Sbjct 7983 TGGGAGATAGTATCATAAATACCTTCGATGGAGTCATCCTGCATTG---TTAGCAAGAAG 7927 Query 115166 CTCGACATT---TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATG 115222 | || || || || | || |||| |||||| || || || | || || | Sbjct 7926 CAGGAACTTAGCTGAGGACGATTAGTTCCAGAGTTGAAAAGTGTAGGAGAGGCATGAGTA 7867 Query 115223 AACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGA 115282 || | | || ||||| | ||| || | ||| | || || || || || Sbjct 7866 AAAAAGCGCTGTGACATGAGGTGGTATGTAGTGATAGCGGATTGGATATCATCGCCATGG 7807 Query 115283 ATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGC 115342 ||||| || ||| ||||| | | |||||| ||| |||| || | |||| || | Sbjct 7806 ATACCAATGCTGACGCGCATGAGAAGGTATTGTGGTCTTTCAATAATTTTACCGTCAACT 7747 Query 115343 CTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 || |||||||| | | || | ||| |||| ||||| || Sbjct 7746 TTCAGGAGGTAAGACCTTTCGAGGGTTTTGAAGCCAAAGTA 7706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597295738836920