Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5539 141 9e-29 seq923 127 2e-24 seq7711 91.5 1e-13 seq6735 91.5 1e-13 seq1303 91.5 1e-13 >seq5539 Length=6842 Score = 141 bits (156), Expect = 9e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||||||||||||||||||||| | | ||| || | ||||| || || Sbjct 991 TGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTACGGCCATCTTCTAGTTGT 1050 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| |||| | || ||||| || |||||||||||||| || ||||| |||||| Sbjct 1051 TTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTT 1110 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 || || ||| ||| | | |||| | || ||||| | ||||| ||| || || || Sbjct 1111 TGTTTAACATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGGTTTTACCTGTA 1170 Query 64421 AAAGTTTTTACGAAAATTTGCATTTTAATAA 64451 | ||| ||||| ||||| |||||| ||| || Sbjct 1171 AGAGTCTTTACAAAAATCTGCATTCTAAAAA 1201 >seq923 Length=21762 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| |||||||| || | | ||||| ||||||| ||||| || || Sbjct 10618 GTGGATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCGTCTTCGAGCTGTTTACCT 10677 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||| || |||||||| || || |||||||| || ||||| ||||| ||||| Sbjct 10678 GCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTG 10737 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | ||| || | || ||||| | || | ||||| || || | |||| Sbjct 10738 ACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTCTTACCTGTTAGAGTT 10797 Query 64427 TTTACGAAAATTTGCATTTT 64446 || |||||||||||||| || Sbjct 10798 TTGACGAAAATTTGCATGTT 10817 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| |||||||| || | | ||||| ||||||||||||| || || Sbjct 10390 GTGGATTCTTTTTGGATGTTGTAGTCAGATAAAGTGCGGCCGTCTTCAAGCTGTTTACCT 10449 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||| || |||||||| || || |||||||| || ||||| ||||| ||||| Sbjct 10450 GCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTCTGCTTG 10509 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | ||| || | || ||||| | || | ||||| || || | || Sbjct 10510 ACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTCTTACCTGTAAGGGTC 10569 Query 64427 TTTACGAAAATTTGCAT 64443 ||||||||||||||||| Sbjct 10570 TTTACGAAAATTTGCAT 10586 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 64311 AAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAA 64370 ||||||| || |||||||| || || |||||||| || ||||| ||||| ||||| || Sbjct 10226 AAATGAGGCGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGT 10285 Query 64371 CCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTA 64430 || | ||| || | || ||||| | || | |||||| || |||| |||||| | Sbjct 10286 TGTCAATTGTGTCCGAAGATTCGACTTCAAGGGTGATGGTCTTACCTGTCAGAGTTTTGA 10345 Query 64431 CGAAAATTTGCAT 64443 ||||||||||||| Sbjct 10346 CGAAAATTTGCAT 10358 >seq7711 Length=15848 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| || || | || | || ||||| ||||| |||||||| || | Sbjct 10638 ACCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGA 10697 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | ||||| | ||||| || || |||| || | ||||| || ||||| Sbjct 10698 GAGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGG 10757 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTAC 64368 ||||||||| || ||||| || ||||| || || Sbjct 10758 AATTCCTTCCTTATCTTGGATCTTTTGTTTGAC 10790 >seq6735 Length=1584 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| || || | || | || ||||| ||||| |||||||| || | Sbjct 985 ACCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGA 1044 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | ||||| | ||||| || || |||| || | ||||| || ||||| Sbjct 1045 GAGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGG 1104 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTAC 64368 ||||||||| || ||||| || ||||| || || Sbjct 1105 AATTCCTTCCTTATCTTGGATCTTTTGTTTGAC 1137 >seq1303 Length=22699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| || || | || | || ||||| ||||| |||||||| || | Sbjct 4646 ACCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGA 4587 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | ||||| | ||||| || || |||| || | ||||| || ||||| Sbjct 4586 GAGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGG 4527 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTAC 64368 ||||||||| || ||||| || ||||| || || Sbjct 4526 AATTCCTTCCTTATCTTGGATCTTTTGTTTGAC 4494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499596403155560