Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq923 100 3e-16 seq5539 98.7 1e-15 seq7711 91.5 1e-13 seq6735 91.5 1e-13 seq1303 91.5 1e-13 >seq923 Length=21762 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||| | ||| | ||| || || | | || || ||||| ||||||||||| | Sbjct 10588 CCGCCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAC 10647 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| ||||| |||||||| | | || ||||| || ||||| || || Sbjct 10648 AAAGTGCGGCCGTCTTCGAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGG 10707 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| || || | | || | ||||| | || || || Sbjct 10708 ATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACT 10767 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || ||||| || |||||||| || ||||| |||||| Sbjct 10768 TCAAGGGTGATAGTCTTACCTGTTAGAGTTTTGACGAAAATTTGCATG 10815 >seq5539 Length=6842 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | || || |||||||||||||| ||| | Sbjct 967 CCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAC 1026 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || ||||||||||||| | || | || || || || ||||| Sbjct 1027 AAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGA 1086 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || |||||||||||| | | || | | || | || || || Sbjct 1087 ATTCCTTCCTTATCTTGGATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTACT 1146 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || ||||| ||||||||||||||||| Sbjct 1147 TCAAGAGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 1193 >seq7711 Length=15848 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||||||| | || || || || | ||| ||||| | Sbjct 10672 GATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAATTGCTTACCTGCG 10731 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | || || || ||||| || ||||| || || ||| |||||||| | Sbjct 10732 AAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATCTTTTGTTTGACG 10791 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || ||||| || || ||||||| || | |||||||| || | ||||| Sbjct 10792 TTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTACCGGTTAAGGTTTTG 10851 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 10852 ACAAAGATCTGCATG 10866 >seq6735 Length=1584 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||||||| | || || || || | ||| ||||| | Sbjct 1019 GATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAATTGCTTACCTGCG 1078 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | || || || ||||| || ||||| || || ||| |||||||| | Sbjct 1079 AAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATCTTTTGTTTGACG 1138 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || ||||| || || ||||||| || | |||||||| || | ||||| Sbjct 1139 TTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTACCGGTTAAGGTTTTG 1198 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 1199 ACAAAGATCTGCATG 1213 >seq1303 Length=22699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||||||| | || || || || | ||| ||||| | Sbjct 4612 GATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAATTGCTTACCTGCG 4553 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | || || || ||||| || ||||| || || ||| |||||||| | Sbjct 4552 AAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATCTTTTGTTTGACG 4493 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || ||||| || || ||||||| || | |||||||| || | ||||| Sbjct 4492 TTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTACCGGTTAAGGTTTTG 4433 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 4432 ACAAAGATCTGCATG 4418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496214330783280