Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq5539 134 1e-26 seq923 100 2e-16 seq7711 91.5 1e-13 seq6735 91.5 1e-13 seq1303 91.5 1e-13 >seq5539 Length=6842 Score = 134 bits (148), Expect = 1e-26 Identities = 158/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| || ||||| ||||| |||||||| |||||||||||| || || || | ||| Sbjct 984 AACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCG--GACAAGGTACGGCCATCT 1041 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 |||| |||||| || ||| | ||||| || || || || |||||||||||||| || Sbjct 1042 TCTAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCT 1101 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| ||| ||| | || |||| ||| | |||||| || | || |||||| Sbjct 1102 TGGATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGGTT 1161 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| ||||||||||| ||||| Sbjct 1162 TTACCTGTAAGAGTCTTTACAAAAATCTGCAT 1193 >seq923 Length=21762 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | | || ||| || || || || || |||||||| |||||||| || Sbjct 10360 CCACCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAT 10419 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||||| | ||||| || ||| | || | ||| || ||||| ||| Sbjct 10420 AAAGTGCGGCCGTCTTCAAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGG 10479 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| |||||| || || | || || || || | ||| || Sbjct 10480 ATTCCTTCCTTGTCTTGAATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACT 10539 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| || || |||||||| || || ||||| |||||||||||| Sbjct 10540 TCAAGGGTGATAGTCTTACCTGTAAGGGTCTTTACGAAAATTTGCATA 10587 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 || ||| || || || || || |||||||| |||||||| || | | | | |||| Sbjct 10602 TAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCGTC 10661 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| | ||||| || ||| | || | ||| || ||||| ||| |||||||||||||| Sbjct 10662 TTCGAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTC 10721 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||||| || || | || || || || | ||| || || | ||| || || Sbjct 10722 TTGGATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGT 10781 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 |||||||| |||||||| || ||||||||||| || Sbjct 10782 CTTACCTGTTAGAGTTTTGACGAAAATTTGCATGTT 10817 >seq7711 Length=15848 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/246 (69%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||||| || || || |||||||| || ||||| |||||||| ||| | Sbjct 10639 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 10698 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| ||||| || || ||| | || | | || || || ||| Sbjct 10699 AGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 10758 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || || ||| || |||| || | ||| ||| || Sbjct 10759 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 10818 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT-ATTTGAAATAAA 15188 || | |||||| |||||||| || | ||||| ||||| || ||||| || | | |||| Sbjct 10819 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATGATAT--ACTAAA 10876 Query 15189 TTTTTT 15194 ||| || Sbjct 10877 TTTATT 10882 >seq6735 Length=1584 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/246 (69%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||||| || || || |||||||| || ||||| |||||||| ||| | Sbjct 986 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 1045 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| ||||| || || ||| | || | | || || || ||| Sbjct 1046 AGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 1105 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || || ||| || |||| || | ||| ||| || Sbjct 1106 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 1165 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT-ATTTGAAATAAA 15188 || | |||||| |||||||| || | ||||| ||||| || ||||| || | | |||| Sbjct 1166 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATGATAT--ACTAAA 1223 Query 15189 TTTTTT 15194 ||| || Sbjct 1224 TTTATT 1229 >seq1303 Length=22699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/246 (69%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||||| || || || |||||||| || ||||| |||||||| ||| | Sbjct 4645 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 4586 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| ||||| || || ||| | || | | || || || ||| Sbjct 4585 AGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 4526 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || || ||| || |||| || | ||| ||| || Sbjct 4525 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 4466 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT-ATTTGAAATAAA 15188 || | |||||| |||||||| || | ||||| ||||| || ||||| || | | |||| Sbjct 4465 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATGATAT--ACTAAA 4408 Query 15189 TTTTTT 15194 ||| || Sbjct 4407 TTTATT 4402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357358247564465