Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5539 122 8e-23 seq923 107 2e-18 >seq5539 Length=6842 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| || | ||||| || | ||||| ||||||||||| ||||||||| | Sbjct 967 CCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAC 1026 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| ||||| ||||| || ||| | ||||| || |||||||| ||||| Sbjct 1027 AAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGA 1086 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| || |||||| || || | | || | | || | | || ||| Sbjct 1087 ATTCCTTCCTTATCTTGGATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTACT 1146 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || ||||| ||||||||||||||||| Sbjct 1147 TCAAGAGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 1193 >seq923 Length=21762 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || |||||||| || ||||| || || ||||| || || Sbjct 10606 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCGTCTTCG 10665 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| || ||| | || | || ||||| || || || || || |||||||| | Sbjct 10666 AGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 10725 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||||||||||||| |||| || | ||||| | | |||||||| | ||| | || || Sbjct 10726 ATTTTCTGCTTGACGTTG-TCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTCTT 10784 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || |||||||| || ||||| |||||| Sbjct 10785 ACCTGTTAGAGTTTTGACGAAAATTTGCATG 10815 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || |||||||| || ||||| || | ||||| || || Sbjct 10378 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAAGTGCGGCCGTCTTCA 10437 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| || ||| | || | || ||||| || || || || || |||||||| Sbjct 10438 AGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGA 10497 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||||||||||||| |||| || | ||||| | | |||||||| | ||| | || || Sbjct 10498 ATTTTCTGCTTGACGTTG-TCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTCTT 10556 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || ||||| ||||| ||||| Sbjct 10557 ACCTGTAAGGGTCTTTACGAAAATTTGCAT 10586 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGAC 127047 || ||||| || || || || || |||||||| |||||||||||||| |||| || | Sbjct 10234 CGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTTG-TCAAT 10292 Query 127048 GGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| | |||||||| | ||| | || || || ||||||||||| || ||||| Sbjct 10293 TGTGTCCGAAGATTCGACTTCAAGGGTGATGGTCTTACCTGTCAGAGTTTTGACGAAAAT 10352 Query 127108 CTGCAT 127113 ||||| Sbjct 10353 TTGCAT 10358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475454741803760