Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq7711 152 5e-32 seq6735 152 5e-32 seq1303 152 5e-32 seq5539 123 2e-23 seq923 109 5e-19 seq2634 84.2 2e-11 >seq7711 Length=15848 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| || | || | || || || |||||||||||||| || || ||| | Sbjct 10639 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 10698 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||||||| || |||||| | || | || |||||| || || ||| Sbjct 10699 AGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 10758 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| |||||||| || |||||||||| ||| | || |||||| || ||||| Sbjct 10759 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 10818 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| |||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 10819 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 10865 >seq6735 Length=1584 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| || | || | || || || |||||||||||||| || || ||| | Sbjct 986 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 1045 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||||||| || |||||| | || | || |||||| || || ||| Sbjct 1046 AGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 1105 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| |||||||| || |||||||||| ||| | || |||||| || ||||| Sbjct 1106 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 1165 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| |||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 1166 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 1212 >seq1303 Length=22699 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| || | || | || || || |||||||||||||| || || ||| | Sbjct 4645 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 4586 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||||||| || |||||| | || | || |||||| || || ||| Sbjct 4585 AGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 4526 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| |||||||| || |||||||||| ||| | || |||||| || ||||| Sbjct 4525 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 4466 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| |||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 4465 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 4419 >seq5539 Length=6842 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| ||||| || || |||||| | ||| ||| || | |||| Sbjct 991 TGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTACGGCCATCTTCTAGTTGT 1050 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| |||||||| || || ||||| ||||| |||||||| |||||| Sbjct 1051 TTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTT 1110 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| | || | | || ||||| || ||||| ||||| | ||||| || || Sbjct 1111 TGTTTAACATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGGTTTTACCTGTA 1170 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||||||| ||||| Sbjct 1171 AGAGTCTTTACAAAAATCTGCAT 1193 >seq923 Length=21762 Score = 109 bits (120), Expect = 5e-19 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 ||||| |||||| | || | ||||||||||| || || || ||||| || ||||| ||| Sbjct 10669 TGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATT 10728 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || || |||| || | || | ||||| ||||| |||||||| || || | || || || Sbjct 10729 TTCTGCTTGA-CGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTCTTACC 10787 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| || ||||||||||| Sbjct 10788 TGTTAGAGTTTTGACGAAAATTTGCAT 10814 Score = 105 bits (116), Expect = 6e-18 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 ||||| |||||| | || | ||||||||||| || || || ||||| || ||||||||| Sbjct 10441 TGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATT 10500 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || || |||| || | || | ||||| ||||| |||||||| || || | || || || Sbjct 10501 TTCTGCTTGA-CGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTCTTACC 10559 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| ||||||||||| Sbjct 10560 TGTAAGGGTCTTTACGAAAATTTGCAT 10586 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTAC 45274 ||||||||||| || || || ||||| || ||||| ||||| || |||| || | || | Sbjct 10234 CGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTGA-CGTTGTCAAT 10292 Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334 ||||| ||||| |||||||| || || | || || || || |||||||| || ||||| Sbjct 10293 TGTGTCCGAAGATTCGACTTCAAGGGTGATGGTCTTACCTGTCAGAGTTTTGACGAAAAT 10352 Query 45335 TTGCAT 45340 |||||| Sbjct 10353 TTGCAT 10358 >seq2634 Length=12318 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 123587 TATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAA 123646 |||| | || | ||| ||||||| ||||| || |||||||||||||||||||| || || Sbjct 8452 TATTTTAGATTCCCAAATCGAAACTGGAACTCCATACATGCTCTACAAAGACGCTTGTAA 8511 Query 123647 CAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 | | ||| | || || ||| | |||||||| ||| | || |||||| | ||||| Sbjct 8512 CGGCAAATCTAACCAACAAAACCTCGGAACAATTAAAAGCTCAAACCTTTGCACTGAAAT 8571 Query 123707 TATCGAATACA 123717 | ||||||| Sbjct 8572 CGTTGAATACA 8582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451959417840040