Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2634 104 4e-17 seq5042 98.7 2e-15 >seq2634 Length=12318 Score = 104 bits (114), Expect = 4e-17 Identities = 314/483 (65%), Gaps = 24/483 (5%) Strand=Plus/Minus Query 203868 CGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACA 203927 ||||||| || |||| || ||||||||||| ||||| | ||| |||| ||| || || | Sbjct 9638 CGGCAGGTTTGGTTCTGAGGTAGTACATGCCTGTCTTCAAGCCTTTCTTCCAGCCATAAA 9579 Query 203928 TGTGCATGGAAGACAGTTT--GCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTG 203985 ||||||||||| ||||| | | | || |||| | |||||||||| || || ||||| Sbjct 9578 AGTGCATGGAAGTGAGTTTTTGGTAA--TTTGGGTTGTCCATGTGAATATTGAGGGACTG 9521 Query 203986 GCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAAT 204045 |||||| || ||| ||| | || || || | | || || |||| ||| || ||| Sbjct 9520 GCTTTGATCAATGTAAGCTCCACGGTCGGCAGATAAATCAATGATGGCCTTTTGTTTAAT 9461 Query 204046 CTCCCACACCGTCTTGAA---------CACGTC-TCTGGTGTGTTGAGGCACATCTTCCC 204095 || | || || ||| | || ||| ||||| | ||| |||| | Sbjct 9460 TTCATAAACAGTTTTGTAGAGCTGTTTCAAGTCATCTGG-GATTTGGGGCAGA------- 9409 Query 204096 ACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGC 204155 | | ||| || || |||| || || | | | | || || || ||||| || Sbjct 9408 --GCCTGGATAGATCCATTGTGTGCGATTATTTGCTGGCGTGTATCATCAGACCACAAGC 9351 Query 204156 CCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCA 204215 | ||| || || |||| | ||||| | | || || ||||| | || | Sbjct 9350 CGCGTTTGACTAGATCACGCAATAACCAAGGGTTAACAACTTGGAATTCTCCAGCGAGAA 9291 Query 204216 CCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCT 204275 | | || ||| | | ||| ||| |||| ||||| |||||| ||| ||||| | Sbjct 9290 CGCGACGAGTGTAAATGTTTGATGTGTATGGCTCGAAGCATTCGTTGAAGCCCAAAATTT 9231 Query 204276 GAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTT 204335 ||| ||| ||| || ||||| ||||| || || || ||||| | |||||| |||||| Sbjct 9230 GAGATGTGGAGGCTGTAGGCATTGGAGCGAGCAGGAGAGAGTTTCTGACACCGAATTTTT 9171 Query 204336 GGA 204338 || Sbjct 9170 TGA 9168 >seq5042 Length=7215 Score = 98.7 bits (108), Expect = 2e-15 Identities = 229/345 (66%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 159902 ATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATG 159961 ||| ||| || |||| ||||| |||| ||| ||| || || ||||| | | |||| Sbjct 5655 ATGAGGTATTTGAACAATAGGCAGCCAAAATCGGTGTGAAGACCTTCGTCTCTACAGATA 5714 Query 159962 AACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCC 160021 | |||||||| | | || || ||||||| |||||| ||||||||| || ||||| Sbjct 5715 AGTTCGTTGGAGAAAGTAAGACCGGGCATGAGGCCACGCTTTTTGAGCCAGAAGATGGCG 5774 Query 160022 GCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCA 160081 ||||||| || || || ||||| || || ||| | ||| || | || || || ||| Sbjct 5775 GCAAAAGAGCCACTGAAGAAGATGCCTTCAACGACACAAAAAGCAGCCAGTCTTTCGCCA 5834 Query 160082 AAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCAC 160141 || ||| | ||||| ||||| ||||| | |||||| || ||||| Sbjct 5835 AAGCTTTTGTTAGAGTCATCAATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAG 5894 Query 160142 GGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC----ATCCTTGATCAG 160197 || ||| | |||||||| | | ||| || |||| ||| ||||| Sbjct 5895 GGGATGTTTTGAACGGCGTTGAGTAGGAAGTC----TCTTTCAACGTTATCTTTGATGTA 5950 Query 160198 AGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 |||| |||| ||| | ||||||||||| ||| | ||||| || Sbjct 5951 AGTATCAATAAGCATGGAGTACATTTCACTGTGGATGTTTTCAAT 5995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795078179279440