Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5042 158 1e-33 seq923 132 5e-26 seq7711 120 3e-22 seq6735 120 3e-22 seq1303 120 3e-22 seq7572 98.7 1e-15 >seq5042 Length=7215 Score = 158 bits (174), Expect = 1e-33 Identities = 385/574 (67%), Gaps = 31/574 (5%) Strand=Plus/Plus Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 ||||||| | ||| |||| ||| || | || ||||| || | || ||||||||| Sbjct 5664 TTGAACAATAGGCAGCCAAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTG 5723 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 |||||| | |||||||||||||| || ||||||||||| || |||||||| ||| | Sbjct 5724 GAGAAAGTAAGACCGGGCATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAG 5783 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCT 133062 || ||||||| ||| || ||| | ||||| |||| | ||||| || ||| Sbjct 5784 CCACTGAAGAAGATGCCTTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAA----GCT 5839 Query 133063 TCTTTGCTGGCG------ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGC 133116 | ||| | | | ||||| || ||||| | ||||||| || | ||| || Sbjct 5840 T--TTGTTAGAGTCATCAATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGG 5897 Query 133117 ATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC----ACGTAGGT 133172 || ||| | |||||| | | | ||| ||||| | | | | | ||| || Sbjct 5898 ATGTTTTGAACGGCGTTGAGTAG--GAAGT--CTCTTTCAACGTTATCTTTGATGTAAGT 5953 Query 133173 GTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTA 133232 || || || | || |||||||| ||| | ||| || || ||||| || || || Sbjct 5954 ATCAATAAGCATGGAGTACATTTCACTGTGGATGTTTTCAATCATAATTTGGAAACCATA 6013 Query 133233 AAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCT--CGACCAGATTTTCG 133290 ||| || || || || | || ||||| | | ||| | | |||| || |||||| Sbjct 6014 AAAACAGCGGGCTTCAGGGATTTGGACTTCA-GTTCCAAA-GTTGGCGACGAGGTTTTCG 6071 Query 133291 TTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCG 133350 |||||||| || |||||||| ||||| ||||| || | || |||||| |||| | ||| Sbjct 6072 TTGACGATACCATCGCTGGCAGCGAAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCG 6131 Query 133351 TTGTC-GTTCAAGC----GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGA 133405 || || ||| ||| ||||||| | ||||| | ||||| || || || || | Sbjct 6132 TTATCAGTT--AGCTTATTTTCCCAGTGTTGAGTGTCGTGTGACAGATCGACTTCTTCAA 6189 Query 133406 CGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || || || |||||||||||||| Sbjct 6190 CGGTCCAGAAACTGGCTTCAGCTTTTTTGTACAT 6223 >seq923 Length=21762 Score = 132 bits (146), Expect = 5e-26 Identities = 176/242 (73%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 38230 AACTCTTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCG 38289 || ||| | | || |||||||| ||||| ||||| || || || || || |||||| | | Sbjct 10828 AATTCTATCACAACATGCAAATTTTCGTCAAAACTCTAACAGGTAAGACTATCACCCTTG 10769 Query 38290 ACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGA 38348 | ||||| | | |||| | | |||| | || | ||||||| ||||| || ||| Sbjct 10768 AAGTCGAATCTTCAGACACAATTGACAACG-TCAAGCAGAAAATCCAAGACAAGGAAGGA 10710 Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 || || | ||||| || || ||||||| ||| || |||||||| || |||| ||||| Sbjct 10709 ATCCCACCAGACCAGCAACGTCTCATTTTCGCAGGTAAACAGCTCGAAGACGGCCGCACT 10650 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGC 38468 | ||||||||||||||||| ||| | || || || ||||| || ||| | |||||| Sbjct 10649 TTGTCTGACTACAACATCCAAAAAGAATCCACTCTCCACTTGGTTCTACGTCTCAGAGGC 10590 Query 38469 GG 38470 || Sbjct 10589 GG 10588 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| || || || || || || |||||| | || ||||| | | Sbjct 10586 ATGCAAATTTTCGTAAAGACCCTTACAGGTAAGACTATCACCCTTGAAGTCGAATCTTCA 10527 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||||| | ||||| || ||||| || | ||||| Sbjct 10526 GACACAATTGACAACG-TCAAGCAGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCA 10468 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| ||| || |||||||| || |||| ||||| | |||||||| Sbjct 10467 GCAACGTCTCATTTTCGCAGGTAAACAGCTTGAAGACGGCCGCACTTTATCTGACTACAA 10408 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||| | || || || ||||| || ||| | ||||| || Sbjct 10407 CATCCAAAAAGAATCCACTCTCCACTTGGTTCTACGTCTCAGAGGTGG 10360 >seq7711 Length=15848 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || || ||||| || ||| |||| ||||| || || Sbjct 10865 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 10806 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | ||||| | ||| |||| |||| || || || |||||||| | || || Sbjct 10805 GACTCCATCGAAAACG-TCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 10747 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | || |||| ||| || || || |||| || | ||||||||| ||||||||| Sbjct 10746 GCAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAA 10687 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||||||| | || || || ||||| || Sbjct 10686 CATCCAAAAGGAATCTACCCTCCACTTGGTCCT 10654 >seq6735 Length=1584 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || || ||||| || ||| |||| ||||| || || Sbjct 1212 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 1153 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | ||||| | ||| |||| |||| || || || |||||||| | || || Sbjct 1152 GACTCCATCGAAAACG-TCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 1094 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | || |||| ||| || || || |||| || | ||||||||| ||||||||| Sbjct 1093 GCAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAA 1034 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||||||| | || || || ||||| || Sbjct 1033 CATCCAAAAGGAATCTACCCTCCACTTGGTCCT 1001 >seq1303 Length=22699 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || || ||||| || ||| |||| ||||| || || Sbjct 4419 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 4478 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | ||||| | ||| |||| |||| || || || |||||||| | || || Sbjct 4479 GACTCCATCGAAAACG-TCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 4537 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | || |||| ||| || || || |||| || | ||||||||| ||||||||| Sbjct 4538 GCAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAA 4597 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||||||| | || || || ||||| || Sbjct 4598 CATCCAAAAGGAATCTACCCTCCACTTGGTCCT 4630 >seq7572 Length=6253 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/168 (74%), Gaps = 7/168 (4%) Strand=Plus/Plus Query 133277 CGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGA 133336 |||| || |||||||||||||| || |||||||| ||||| ||||| || | || ||||| Sbjct 71 CGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGCGAGGATGTTCTTGA 130 Query 133337 TGAAATGGCGCTCGTTGTC-GTTCAAGC----GCTCCCAGTCGCGCGTGTCCTTGGACAG 133391 | |||| | ||||| || ||| ||| ||||||| | ||||| | ||||| Sbjct 131 TAAAATATCTTTCGTTATCAGTT--AGCTTATTTTCCCAGTGTTGAGTGTCGTGTGACAG 188 Query 133392 GTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || || || || |||||||| || || || |||||||||||||| Sbjct 189 ATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACAT 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500124352012160