Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq22 116 4e-21 >seq22 Length=60687 Score = 116 bits (128), Expect = 4e-21 Identities = 195/282 (69%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 153746 TGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805 |||||||| | | || | | |||||||| ||| || || | || |||||||| || || Sbjct 4988 TGATATTGTTCTTGGAAATTCTCAAAGGTTCGGTGTTTCTCTTGGTTATGGAGGACCCCA 4929 Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG 153865 || ||||| || || ||||| || | ||||| || | || || | | ||||| Sbjct 4928 CGCCGCATTTTTCGCTACAACTGATGCATTAAAGAGGAAAGTCCCAGGTCGTTTAGTAGG 4869 Query 153866 TCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCA 153925 | || || || | | ||||| | |||||| ||| | || || || || | || || Sbjct 4868 TGTATCTGTTGACACTAAAGGTCGAACAGCATATAGACTTGCCCTCCAAACCCGTGAACA 4809 Query 153926 GCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAA 153985 |||||||| ||||||||||| || |||||||| || |||||||| || | || || Sbjct 4808 ACATATCAGAAGAGACAAAGCTACTTCAAACATCTGTACCGCTCAGGCCCTCTTAGCAAA 4749 Query 153986 TATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACT 154027 |||| ||| | || |||| || ||||| |||| || || Sbjct 4748 TATGGCTGCCATGTACGCAGTCTACCATGGCCCAGAAGGTCT 4707 Score = 95.1 bits (104), Expect = 1e-14 Identities = 500/782 (64%), Gaps = 26/782 (3%) Strand=Plus/Minus Query 154358 AGTATTCAATAAGTATCATAGTGAAACTGACATGATGAGATATATCTACGAGTTATGCTC 154417 ||| || || |||||||| ||||||||| ||| | || ||| | |||| Sbjct 4337 AGTGTTTAACAAGTATCACTCTGAAACTGAAATGTTAAGGTATCTAACTTTGTTACAAAA 4278 Query 154418 TAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAA 154477 ||| || | || || | ||| | ||| | || || ||| ||||||||||||| | || Sbjct 4277 TAAGGACCTATCTTTGGCAAACGCAATGATACCGCTAGGCTCTTGCACAATGAAACTCAA 4218 Query 154478 TGCAGCAGCAGAACTAATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATAC 154537 | || | ||| | || ||| | | ||| ||||||| | ||| | ||||| | Sbjct 4217 TAGTACATCTGAAATGATTCCTATCACTTGGCCAGAGTTTTCAAACATCCATCCTTTCTC 4158 Query 154538 ACCTATGATACAGACCATGGGTTATCAGAAAATT-ATAGATGACTTACAGAAATGGT--T 154594 || || ||||| | || || || |||||| || |||||| |||| | | Sbjct 4157 TCCAGAGAATCAGACATTAGGATA-CAAAAAATTGATTTCTGACTTG--GAAACCGACCT 4101 Query 154595 ATGTGATATCACAGGGTTTGATTCTATATCAT-TACAACCTAACGCAGGATCACAGGGTG 154653 |||| | |||||||| || || | | | ||||| || ||| | || |||| Sbjct 4100 TTGTGCACTAACAGGGTTAGACGG-ATGTAGTCTTCAACCAAATAGCGGAGCCCAAGGTG 4042 Query 154654 AGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATA---AAA 154710 | || ||||| || |||| ||||||||| || || | || | | | Sbjct 4041 AATACGCAGGTCTTCGCTCAATTAGAGCATACCAAAAA---TCTATAAATCAATCGCATA 3985 Query 154711 GAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGG 154770 |||| | ||||| | ||| || ||||| |||||||| || || ||||| |||| Sbjct 3984 GAAACATTTGTTTAGTTCCAACATCTGCACACGGAACTAACCCCGCATCCGCTGTAATGG 3925 Query 154771 CAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATC 154830 | | || ||||| ||| || |||||| | || || |||| | || | Sbjct 3924 CGAACCTAAAGGTTGTTACTGTAAAATGTGATAGCAAAGGATACCTAGATTTAGCTGACC 3865 Query 154831 TAGAGAAGAAAGCAATCATGAATACATTT-GAAC---TGTCATGTATTATGATTACATAC 154886 || | |||| ||| || ||||| ||| |||| | | |||||||||||||| Sbjct 3864 TAAAATTGAAA----TCAGAAAAACATTCAGAAAATTTGTCTTCTGTTATGATTACATAC 3809 Query 154887 CCATCTACACATGGTGTATTTGAAACTAACATTAGA-CAGATATGTAAGATCGTTCATGA 154945 ||||| || | || | || ||| ||| | | || || ||||| |||||||| Sbjct 3808 CCATCCACTTACGGAATTTTCGAAGAAGGCATCAAAGAAGCTA-CAAAGATTGTTCATGA 3750 Query 154946 CAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAA 155005 |||||||||| || ||| | || || ||||| | |||||||| | || || | || Sbjct 3749 TAATGGTGGTCTAGTTTATATGGACGGTGCAAACTTGAATGCACAAATCGGTATAACTAA 3690 Query 155006 ACCATGTGAGTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTC 155064 ||| |||| ||| || || ||||| || ||| | || |||||| | | ||| ||| Sbjct 3689 CCCAGGTGA-TATGGGGGCTGATGTTTGCCATATCAATAACCATAAATCTCTATGTGTTC 3631 Query 155065 CACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCAT 155124 | || || || || || ||||| || ||||| || | || ||| ||| | | |||| Sbjct 3630 CTCACGGTGGAGGTGGGCCTGGAGTTGGTCCAATTTGCGTTAAAAAGCATTTGATTCCAT 3571 Query 155125 TT 155126 || Sbjct 3570 TT 3569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579156696000160