Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq923 197 3e-45 seq5539 163 6e-35 seq7711 152 1e-31 seq6735 152 1e-31 seq1303 152 1e-31 >seq923 Length=21762 Score = 197 bits (218), Expect = 3e-45 Identities = 177/222 (80%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | ||| |||||||| |||||||| || ||||| || | | ||| Sbjct 10593 TCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGACAAAGT 10652 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||||||||| ||||||||||| || || ||||| |||||||| || || || Sbjct 10653 GCGGCCGTCTTCGAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCC 10712 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| ||||| ||||||||||| ||||| ||||| ||| ||| |||||||| Sbjct 10713 TTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAG 10772 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| ||||| | |||||| ||||| | |||||| Sbjct 10773 GGTGATAGTCTTACCTGTTAGAGTTTTGACGAAAATTTGCAT 10814 Score = 194 bits (214), Expect = 4e-44 Identities = 176/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | ||| |||||||| |||||||| || ||||| || | | ||| Sbjct 10365 TCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAAGT 10424 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| ||||| ||||||||||| || || ||||| |||||||| || || || Sbjct 10425 GCGGCCGTCTTCAAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCC 10484 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||||||||| ||||||||||| ||||| ||||| ||| ||| |||||||| Sbjct 10485 TTCCTTGTCTTGAATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAG 10544 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| ||||| | || |||||||| | |||||| Sbjct 10545 GGTGATAGTCTTACCTGTAAGGGTCTTTACGAAAATTTGCAT 10586 Score = 138 bits (152), Expect = 3e-27 Identities = 111/134 (83%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 195007 AAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACG 195066 || || || ||||| |||||||| || || ||||| |||||||| ||||| ||||||||| Sbjct 10225 AAAATGAGGCGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTGACG 10284 Query 195067 TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126 || ||||| ||||||||| ||| ||||||||||| | ||||| ||||||| |||||| Sbjct 10285 TTGTCAATTGTGTCCGAAGATTCGACTTCAAGGGTGATGGTCTTACCTGTCAGAGTTTTG 10344 Query 195127 ACGAACACTTGCAT 195140 ||||| | |||||| Sbjct 10345 ACGAAAATTTGCAT 10358 >seq5539 Length=6842 Score = 163 bits (180), Expect = 6e-35 Identities = 165/212 (78%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | ||||||||| || ||||||||||| |||||||||| |||| || | ||||||| Sbjct 984 AACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAG-GTACGGCCATCTT 1042 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | || || ||||| ||||| || | ||||| || ||||||||||| ||||| || |||| Sbjct 1043 CTAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTT 1102 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | |||||||| || || |||||||| | || ||| ||| |||||||| || | || | Sbjct 1103 GGATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGGTTT 1162 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | ||||| | ||| ||||| || | |||||| Sbjct 1163 TACCTGTAAGAGTCTTTACAAAAATCTGCATT 1194 >seq7711 Length=15848 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||| | || | ||| || || || || ||||| || ||||| |||| || || | Sbjct 10647 GAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCG 10706 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | |||||||||||||| ||||||| ||| || ||||||||||| ||||| Sbjct 10707 ACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTC 10766 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || ||||| || ||||| |||||||| || |||| ||| || ||| || || ||||| Sbjct 10767 CTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGT 10826 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || || || ||||| || || | ||||| Sbjct 10827 AATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 10865 >seq6735 Length=1584 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||| | || | ||| || || || || ||||| || ||||| |||| || || | Sbjct 994 GAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCG 1053 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | |||||||||||||| ||||||| ||| || ||||||||||| ||||| Sbjct 1054 ACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTC 1113 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || ||||| || ||||| |||||||| || |||| ||| || ||| || || ||||| Sbjct 1114 CTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGT 1173 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || || || ||||| || || | ||||| Sbjct 1174 AATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 1212 >seq1303 Length=22699 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||| | || | ||| || || || || ||||| || ||||| |||| || || | Sbjct 4637 GAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCG 4578 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | |||||||||||||| ||||||| ||| || ||||||||||| ||||| Sbjct 4577 ACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTC 4518 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || ||||| || ||||| |||||||| || |||| ||| || ||| || || ||||| Sbjct 4517 CTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGT 4458 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || || || ||||| || || | ||||| Sbjct 4457 AATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 4419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109371446159483