Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5539 102 5e-17 seq7711 98.7 6e-16 seq6735 98.7 6e-16 seq1303 98.7 6e-16 seq923 87.8 1e-12 >seq5539 Length=6842 Score = 102 bits (112), Expect = 5e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || |||||| |||||||| || || || | | | || |||| || Sbjct 984 AACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTACGGCCATCTTC 1043 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||||| ||||| || || | |||||||| ||| | || | || ||||| || Sbjct 1044 TAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTG 1103 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 || || ||||| || || || || || ||| | || || || | ||||||||| Sbjct 1104 GATTTTTTGTTTAAC--ATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGGTT 1161 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||| |||||||| Sbjct 1162 TTACCTGTAAGAGTCTTTACAAAAATCTGCAT 1193 >seq7711 Length=15848 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || ||| || || ||||| ||||| || ||| | || |||| ||| Sbjct 10657 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCC 10716 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || || || || || || |||| |||||| ||| | || | || ||||| || Sbjct 10717 AATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 10776 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||||| | | || || || || || || |||| ||| || ||||| Sbjct 10777 ATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTA 10836 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || || |||||||||||||| Sbjct 10837 CCGGTTAAGGTTTTGACAAAGATCTGCAT 10865 >seq6735 Length=1584 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || ||| || || ||||| ||||| || ||| | || |||| ||| Sbjct 1004 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCC 1063 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || || || || || || |||| |||||| ||| | || | || ||||| || Sbjct 1064 AATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 1123 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||||| | | || || || || || || |||| ||| || ||||| Sbjct 1124 ATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTA 1183 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || || |||||||||||||| Sbjct 1184 CCGGTTAAGGTTTTGACAAAGATCTGCAT 1212 >seq1303 Length=22699 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || ||| || || ||||| ||||| || ||| | || |||| ||| Sbjct 4627 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCC 4568 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || || || || || || |||| |||||| ||| | || | || ||||| || Sbjct 4567 AATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 4508 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||||| | | || || || || || || |||| ||| || ||||| Sbjct 4507 ATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTA 4448 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || || |||||||||||||| Sbjct 4447 CCGGTTAAGGTTTTGACAAAGATCTGCAT 4419 >seq923 Length=21762 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| |||||| || ||||| ||||| || | | || | || || Sbjct 10377 AACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAAGTGCGGCCGTCTTC 10436 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||| || || || || || |||||||||||| | || | || |||||||| Sbjct 10437 AAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTG 10496 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| ||||| |||||| | || | || | || || || | ||| || || || Sbjct 10497 AATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTCTT 10556 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| || || || |||||| Sbjct 10557 ACCTGTAAGGGTCTTTACGAAAATTTGCATA 10587 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| |||||| || ||||| ||||| || | | || | || || Sbjct 10605 AACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCGTCTTC 10664 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||| || || || || || |||||||||||| | || | || |||||||| Sbjct 10665 GAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTG 10724 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 || ||||| |||||| | || | || | || || || | ||| || || || Sbjct 10725 GATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTCTT 10784 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || ||||| || || || || ||||| || Sbjct 10785 ACCTGTTAGAGTTTTGACGAAAATTTGCATGTT 10817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324602941298472