Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5042 212 7e-50 seq2634 123 3e-23 seq7572 89.7 6e-13 >seq5042 Length=7215 Score = 212 bits (234), Expect = 7e-50 Identities = 601/917 (66%), Gaps = 21/917 (2%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || ||| ||| | |||||||||||||||||||| || | | || || ||| Sbjct 5385 TTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTGCATAGAGAT-CAT 5443 Query 18730 -TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||| ||||| || | || | ||| ||| |||| |||| || || Sbjct 5444 ATCCATGAAATCGAATGGGTTAGTGACGTGATAATGTTTGCTGAAACCTAGAGACAAAAG 5503 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || | || || ||||||| ||||| | ||| | | | |||||||||||||| Sbjct 5504 TAAACGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTATTCATTCCTATTAG 5563 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 |||||||||| || || | ||||||||||| || | || ||||| | | || Sbjct 5564 GGAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGGCCTCAGCAACGAT 5623 Query 18909 AGATACAACTCTATCTTCATTAGGAGGG--TATAGA--AGATGTTTAAACATCAAACATG 18964 | || | | | |||||| ||||| | | || || | ||| |||| | || Sbjct 5624 GGCTAATATTTTTTCTTCA----GAGGGCTTGTTGATGAGGTATTTGAACAATAGGCAGC 5679 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 ||||||| || || || |||||||||| || | ||| || || || || | ||| | Sbjct 5680 CAAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAGTAAGACCGG 5739 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATAC 19084 |||| || || | ||||| | |||||| || | ||||| || ||| ||||| || | Sbjct 5740 GCATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGAAGAAGATGC 5799 Query 19085 CTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCC 19144 |||| || | ||||||| | |||||||| ||| | || | | | || ||||| Sbjct 5800 CTTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAAGCTTTTGTTAGAGTCATCAATCC 5859 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 | | || ||||| | |||||| || || | || || || | | | | || | || Sbjct 5860 ACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACGGCGTTGAGTA 5919 Query 19205 GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAAC----TGTACATT 19260 | | | ||| | ||||||| ||| | ||||||||| | ||||||| Sbjct 5920 GGAAGTCTCTTTCAACGTTATCTTT----GATGTAAGTATCAATAAGCATGGAGTACATT 5975 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 || || || ||||| || || || || || |||||||| | ||||| | || Sbjct 5976 TCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATT 6035 Query 19321 TGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 || |||||| | | ||| | |||| | ||||| || || || ||||| || || || Sbjct 6036 TGGACTTCAGTTCCAAAGTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCG 6095 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT---CCAA 19437 || || || | | | || ||||||| | |||| | |||| |||| ||| Sbjct 6096 AAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAG 6155 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 | | | | || | || | ||| ||||||||||| ||||| ||| || || |||||| Sbjct 6156 TGTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTT 6215 Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTT 19557 || ||||| | |||||| || | ||| ||| || || | || ||||||||| || Sbjct 6216 TTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTATTTGGGTTG 6275 Query 19558 TCTTTAAGAATAGGTTC 19574 |||||| | ||| || Sbjct 6276 GGTTTAAGTAGAGGCTC 6292 >seq2634 Length=12318 Score = 123 bits (136), Expect = 3e-23 Identities = 356/543 (66%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 48263 TTCTTCATTGCCACTATTCCTT-TTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATG 48321 |||||| || || ||| || ||| ||| || ||| || | || || |||||||||| Sbjct 8239 TTCTTCTTTACCGTGATTTTTTCTTAGGTTTAA-AAATTCAAAAATGTCGGCATGCCATG 8181 Query 48322 GTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGG 48381 |||| | || || || | | ||||| ||||| || || ||||| || | ||||| | Sbjct 8180 GTTCAAGGTAAATGGCGAAGGCGCCTGGACGTTTGTTGCCGCCTTGGTCGACGTATCTAG 8121 Query 48382 CAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCG 48441 | ||| |||| | ||| | |||||| ||||| || || || ||||||||||||| | Sbjct 8120 CGGTAGTGTTGAATACTTGGAGCATTGGAACAATTCCGTTCGAAGTACCATTGGTTCCGG 8061 Query 48442 AAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTT 48501 || ||| ||| | || | ||||| || | ||| || ||||| || || Sbjct 8060 CGATGTAAGAGCCAGTTGCACGAATATTGTGGATACTTAGACCAATTCCACCAGCAGATT 8001 Query 48502 TAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCA 48561 |||| ||| ||| || | | ||||||||||| ||||| || ||||| || Sbjct 8000 TAGAGATTTTAGCGCATTGGGAGATAGTATCATAAATACCTTCGATGGAGTCATCCTGCA 7941 Query 48562 TATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTG 48621 | ||| | || || | | || ||| || |||||| || || || | ||| | Sbjct 7940 TTGTTAGCAAGAAGCAGGAACTTAGCTGAGGACGATTAGTTCCAGAGTTGAAAAGTGTAG 7881 Query 48622 GAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTA 48681 |||| |||||| |||| | || ||| | | | ||||| ||| | || | | Sbjct 7880 GAGAGGCATGAGTAAAAAAGCGCTGTGACATGAGGTGGTATGTAGTGATAGCGGATTGGA 7821 Query 48682 TATCCCATTG--ATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAAC 48739 ||| ||| | ||| ||||| || || ||||| | | ||||| |||||||||| Sbjct 7820 TAT--CATCGCCATGGATACCAATGCTGACGCGCATGAGAAGGTATTGTGGTCTTTCAAT 7763 Query 48740 AATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTT 48799 |||||| | | ||||| || || || |||| | ||||| || ||||| ||||| Sbjct 7762 AATTTTACCGTCAACTTTCAGGAGGTAAGACCTTTCGAGGGTTTTGAAGCCAAAGTAGTT 7703 Query 48800 GTA 48802 || Sbjct 7702 ATA 7700 >seq7572 Length=6253 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 || || || || |||||||| | ||||| | || || |||||| | | ||| | || Sbjct 13 ATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGACTTCAGTTCCAAAGTTGGCG 72 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 || | ||||| || || || ||||| || || || || || || | | | || ||| Sbjct 73 ACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGCGAGGATGTTCTTGATA 132 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATT---CCAATCATTAATATCTTTAGATAAATCT 19461 |||| | |||| | |||| |||| ||| | | | | || | || | ||| Sbjct 133 AAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTGTTGAGTGTCGTGTGACAGATCG 192 Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 ||||||||||| ||||| ||| || || |||||||| ||||| | |||||| || | Sbjct 193 ACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACATTTGCCATATTTCGTGC 252 Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 ||| ||| || || | || ||||||||| || |||||| | ||| || Sbjct 253 CATTTTATTGGGAAGAGGACGAATCTATTTGGGTTGGGTTTAAGTAGAGGCTC 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562054352736360