Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq5042 150 2e-31 seq7572 84.2 3e-11 >seq5042 Length=7215 Score = 150 bits (166), Expect = 2e-31 Identities = 404/612 (66%), Gaps = 13/612 (2%) Strand=Plus/Plus Query 37161 TATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCA 37220 ||||| ||||||| || ||||||| || | |||||| ||||||| || | ||| Sbjct 5661 TATTTGAACAATAGGCAGCCAAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCG 5720 Query 37221 TTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAA 37280 || || || || | || ||||| | || | ||||| | ||| || || || |||||| Sbjct 5721 TTGGAGAAAGTAAGACCGGGCATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAA 5780 Query 37281 GATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT 37340 || ||| ||||| || |||||||| | ||| || | || | | || || || Sbjct 5781 GAGCCACTGAAGAAGATGCCTTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAAGCTT 5840 Query 37341 GAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATT 37400 || | ||| |||||| | | ||| | |||||| |||| || || Sbjct 5841 TTGTTAGAGTCATCAATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATG 5900 Query 37401 GTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATT 37460 ||| || || || | || |||| | |||| | ||||| | || ||||||||||| Sbjct 5901 TTTTGAACGGCGTTGAGTAGGAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATA 5960 Query 37461 AGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACAC 37520 || | ||||||||| ||| || |||||||| || || |||||||||||||| Sbjct 5961 AGCATGGAGTACATTTCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAG 6020 Query 37521 CTAGCTTCAGATAATTGAACATC-GTTAAAAAACCTCTTAG---CTAAGTTTTCATTAAC 37576 | ||||||| | ||| || || ||| ||| || | | | |||||| || || Sbjct 6021 CGGGCTTCAGGGATTTGGACTTCAGTTCCAAA----GTTGGCGACGAGGTTTTCGTTGAC 6076 Query 37577 TATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATC 37633 || ||||| || || || ||||| || || | | || ||||||| |||||| ||| Sbjct 6077 GATACCATCGCTGGCAGCGAAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATC 6136 Query 37634 A-TTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCC 37692 | || | | | |||| ||| | | | | || | ||| | ||| ||||| |||||||||| Sbjct 6137 AGTTAGCTTA-TTTTCCCAGTGTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCC 6195 Query 37693 AAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATA 37752 | ||||| || || ||| ||||| ||| || || | || |||||| || | Sbjct 6196 AGAAACTGGCTTCAGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGA 6255 Query 37753 TTACAAATCTAT 37764 || ||||||| Sbjct 6256 GGACGAATCTAT 6267 >seq7572 Length=6253 Score = 84.2 bits (92), Expect = 3e-11 Identities = 193/285 (68%), Gaps = 13/285 (5%) Strand=Plus/Plus Query 37488 TTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATC-GTT 37546 |||||||| || || |||||||||||||| | ||||||| | ||| || || ||| Sbjct 1 TTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGACTTCAGTT 60 Query 37547 AAAAAACCTCTTAGCTAAG---TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGC 37603 ||| || || | | ||||| || || || ||||| || || || ||||| || Sbjct 61 CCAAAG----TTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGC 116 Query 37604 AAGAACATATTTTATAAAATGTCTTTC---ATCATTT-GATAATTTTTTCCAATCATTAA 37659 || | | || ||||||| |||||| |||| || | | ||||| ||| | | | Sbjct 117 GAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTC-CCAGTGTTGAG 175 Query 37660 TATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTTATACA 37719 | || | ||| | ||| ||||| ||||||||||| ||||| || || ||| |||| Sbjct 176 TGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACA 235 Query 37720 TCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTAT 37764 | ||| || || | || |||||| || | || ||||||| Sbjct 236 TTTGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTAT 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592259426713960