Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq7711 93.3 3e-14 seq6735 93.3 3e-14 seq1303 93.3 3e-14 seq5539 89.7 4e-13 >seq7711 Length=15848 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || ||||| || ||||| || || || | ||| | || ||| Sbjct 10657 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCC 10716 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || |||||||| || || || |||| || ||||| | |||| || ||||| || Sbjct 10717 AATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 10776 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||||||||| || | | || || || | || ||||| | ||||| ||||| Sbjct 10777 ATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTA 10836 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| ||||| |||||||| Sbjct 10837 CCGGTTAAGGTTTTGACAAAGATCTGCAT 10865 >seq6735 Length=1584 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || ||||| || ||||| || || || | ||| | || ||| Sbjct 1004 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCC 1063 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || |||||||| || || || |||| || ||||| | |||| || ||||| || Sbjct 1064 AATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 1123 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||||||||| || | | || || || | || ||||| | ||||| ||||| Sbjct 1124 ATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTA 1183 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| ||||| |||||||| Sbjct 1184 CCGGTTAAGGTTTTGACAAAGATCTGCAT 1212 >seq1303 Length=22699 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || ||||| || ||||| || || || | ||| | || ||| Sbjct 4627 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCC 4568 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || |||||||| || || || |||| || ||||| | |||| || ||||| || Sbjct 4567 AATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 4508 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||||||||| || | | || || || | || ||||| | ||||| ||||| Sbjct 4507 ATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTA 4448 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| ||||| |||||||| Sbjct 4447 CCGGTTAAGGTTTTGACAAAGATCTGCAT 4419 >seq5539 Length=6842 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | ||||| || || || ||||||||||| |||||||| || Sbjct 967 CCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAC 1026 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || || | || |||||||| || |||| || || ||||| | ||| Sbjct 1027 AAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGA 1086 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || || |||||||| ||| | | ||| || || | || || Sbjct 1087 ATTCCTTCCTTATCTTGGATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTACT 1146 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || | ||| ||||||||||||||||| Sbjct 1147 TCAAGAGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 1193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380901623895927