Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5539 149 1e-30 seq7711 120 5e-22 seq6735 120 5e-22 seq1303 120 5e-22 seq923 98.7 2e-15 >seq5539 Length=6842 Score = 149 bits (164), Expect = 1e-30 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || |||| || | |||| ||||| ||| || || ||||| Sbjct 966 ACCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGA 1025 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | ||| |||| |||||| ||||| ||||| || | || ||||| ||||| Sbjct 1026 CAAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGG 1085 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| |||||||| ||||| ||| | ||| ||||| ||| ||||| || || Sbjct 1086 AATTCCTTCCTTATCTTGGATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTAC 1145 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 ||| |||||||| ||||||||||| || || |||||||| || |||||| || Sbjct 1146 TTCAAGAGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATTCTA 1197 >seq7711 Length=15848 Score = 120 bits (132), Expect = 5e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| | || | | ||| || ||||| || || || ||||| | ||| Sbjct 10684 ATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTT 10743 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| ||||| |||||||| |||||||| || || ||| | ||| || | Sbjct 10744 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAG 10803 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| || || || || || || ||||||||||| |||| ||||| ||||| || ||| Sbjct 10804 TCGGAGGATTCGACCTCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGC 10863 Query 193359 ATTTTATTAGTAAAATAATTATTTTAAATAA 193389 || || || |||| | ||| ||||||| || Sbjct 10864 ATGATA-TACTAAATTTATTTTTTTAAAAAA 10893 >seq6735 Length=1584 Score = 120 bits (132), Expect = 5e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| | || | | ||| || ||||| || || || ||||| | ||| Sbjct 1031 ATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTT 1090 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| ||||| |||||||| |||||||| || || ||| | ||| || | Sbjct 1091 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAG 1150 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| || || || || || || ||||||||||| |||| ||||| ||||| || ||| Sbjct 1151 TCGGAGGATTCGACCTCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGC 1210 Query 193359 ATTTTATTAGTAAAATAATTATTTTAAATAA 193389 || || || |||| | ||| ||||||| || Sbjct 1211 ATGATA-TACTAAATTTATTTTTTTAAAAAA 1240 >seq1303 Length=22699 Score = 120 bits (132), Expect = 5e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| | || | | ||| || ||||| || || || ||||| | ||| Sbjct 4600 ATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTT 4541 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| ||||| |||||||| |||||||| || || ||| | ||| || | Sbjct 4540 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAG 4481 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| || || || || || || ||||||||||| |||| ||||| ||||| || ||| Sbjct 4480 TCGGAGGATTCGACCTCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGC 4421 Query 193359 ATTTTATTAGTAAAATAATTATTTTAAATAA 193389 || || || |||| | ||| ||||||| || Sbjct 4420 ATGATA-TACTAAATTTATTTTTTTAAAAAA 4391 >seq923 Length=21762 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | || || |||| || | || | ||||| || || Sbjct 10350 AATTTGCATACCACCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTT 10409 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| ||||| || | || || | ||||| || || ||||| | | || || Sbjct 10410 GTAGTCAGATAAAGTGCGGCCGTCTTCAAGCTGTTTACCTGCGAAAATGAGACGTTGCTG 10469 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || |||||||| || ||||| ||||| || | || ||| || || || Sbjct 10470 GTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTCTGCTTGACGTTGTCAATTGTGTCTGA 10529 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || ||||| || || ||||| |||||||| || || ||||| || |||||||| Sbjct 10530 AGATTCGACTTCAAGGGTGATAGTCTTACCTGTAAGGGTCTTTACGAAAATTTGCAT 10586 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| ||||| | || || |||| || | || | ||||| || || Sbjct 10578 AATTTGCATACCGCCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTT 10637 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || || || | || || | ||||| || || ||||| | | || || Sbjct 10638 GTAGTCAGACAAAGTGCGGCCGTCTTCGAGCTGTTTACCTGCGAAAATGAGACGTTGCTG 10697 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || |||||||| || ||||| ||||| || | || ||| || || || Sbjct 10698 GTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCAATTGTGTCTGA 10757 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||| || ||||| || || ||||| ||||||||||| ||||| || || |||||||| || Sbjct 10758 AGATTCGACTTCAAGGGTGATAGTCTTACCTGTTAGAGTTTTGACGAAAATTTGCATGTT 10817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899567257225680