Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq7711 105 1e-17 seq6735 105 1e-17 seq1303 105 1e-17 seq923 96.9 5e-15 >seq7711 Length=15848 Score = 105 bits (116), Expect = 1e-17 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 155787 GTATTTATTGTTTATAATAAAAATTTATGTAATAAAATGCAAATATTTATTAAAACATTG 155846 |||| | || || | || | ||||||| ||| || ||||| || ||| | ||||| || Sbjct 10899 GTATCTTTTTTTAAAAAAATAAATTTA-GTA-TATCATGCAGATCTTTGTCAAAACCTTA 10842 Query 155847 ACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAAT 155906 || || ||||||||||| | || |||||| || || || |||||| ||| | Sbjct 10841 ACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCCGACTCCATCGAAAACGTCAAACAA 10782 Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 || || |||||||| ||||| || |||||||| || |||||| | |||| || |||||| Sbjct 10781 AAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAAGACTTATTTTCGCAGGTAAG 10722 Query 155967 CAGCTCGAAGAT 155978 || | |||||| Sbjct 10721 CAATTGGAAGAT 10710 >seq6735 Length=1584 Score = 105 bits (116), Expect = 1e-17 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 155787 GTATTTATTGTTTATAATAAAAATTTATGTAATAAAATGCAAATATTTATTAAAACATTG 155846 |||| | || || | || | ||||||| ||| || ||||| || ||| | ||||| || Sbjct 1246 GTATCTTTTTTTAAAAAAATAAATTTA-GTA-TATCATGCAGATCTTTGTCAAAACCTTA 1189 Query 155847 ACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAAT 155906 || || ||||||||||| | || |||||| || || || |||||| ||| | Sbjct 1188 ACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCCGACTCCATCGAAAACGTCAAACAA 1129 Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 || || |||||||| ||||| || |||||||| || |||||| | |||| || |||||| Sbjct 1128 AAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAAGACTTATTTTCGCAGGTAAG 1069 Query 155967 CAGCTCGAAGAT 155978 || | |||||| Sbjct 1068 CAATTGGAAGAT 1057 >seq1303 Length=22699 Score = 105 bits (116), Expect = 1e-17 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 155787 GTATTTATTGTTTATAATAAAAATTTATGTAATAAAATGCAAATATTTATTAAAACATTG 155846 |||| | || || | || | ||||||| ||| || ||||| || ||| | ||||| || Sbjct 4385 GTATCTTTTTTTAAAAAAATAAATTTA-GTA-TATCATGCAGATCTTTGTCAAAACCTTA 4442 Query 155847 ACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAAT 155906 || || ||||||||||| | || |||||| || || || |||||| ||| | Sbjct 4443 ACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCCGACTCCATCGAAAACGTCAAACAA 4502 Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 || || |||||||| ||||| || |||||||| || |||||| | |||| || |||||| Sbjct 4503 AAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAAGACTTATTTTCGCAGGTAAG 4562 Query 155967 CAGCTCGAAGAT 155978 || | |||||| Sbjct 4563 CAATTGGAAGAT 4574 >seq923 Length=21762 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | ||||| | || || || ||||| || | ||||||||| | Sbjct 10817 AACATGCAAATTTTCGTCAAAACTCTAACAGGTAAGACTATCACCCTTGAAGTCGAATCT 10758 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| ||||| || | ||||| ||||| || ||||| || || ||||| Sbjct 10757 TCAGACACAATTGACAACGTCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCACCAGAC 10698 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||| | | |||| || ||||| ||||||||||| | | ||||| || || || Sbjct 10697 CAGCAACGTCTCATTTTCGCAGGTAAACAGCTCGAAGACGGCCGCACTTTGTCTGACTAC 10638 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||||| | || || || || || || | | ||||||||| Sbjct 10637 AACATCCAAAAAGAATCCACTCTCCACTTGGTTCTACGTCTCAGAGGCGGT 10587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731801109048400