Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2634 165 2e-35 seq157 111 5e-19 seq5171 96.9 1e-14 seq2270 86.0 2e-11 >seq2634 Length=12318 Score = 165 bits (182), Expect = 2e-35 Identities = 502/771 (65%), Gaps = 16/771 (2%) Strand=Plus/Minus Query 155582 AAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAAT 155641 |||| ||||||| || | || || || ||| || | | | | ||||||| || || Sbjct 8629 AAGAGCAATAGAGGCTAAGTTGCAAACAGCAACTTCGTCCTTGGAGGTGTATTCAACGAT 8570 Query 155642 CTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTT 155701 ||| ||| ||||| || || || || || || | || | ||||||||||| | ||| Sbjct 8569 TTCAGTGCAAAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTGCCGTT 8510 Query 155702 ACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTT 155761 |||||| || ||||| || |||||||| ||||| || || || || | || | ||| Sbjct 8509 ACAAGCGTCTTTGTAGAGCATGTATGGAGTTCCAGTTTCGATTTGGGAATCTAAAATAGC 8450 Query 155762 TAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACT---CATATTT 155818 |||||| | ||||| | || | ||| ||||| | | | ||||| Sbjct 8449 GTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGTTTTCGTATTT 8390 Query 155819 CATATACAGCGTTCG--GTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCG 155876 | || || ||| | | | ||| || || ||| || |||||| | || | Sbjct 8389 TAGGTAGAG--TTCATCGAACTTCTCGCCCCAAACGTCAGCTAGACCAGGGGCTTCATGG 8332 Query 155877 GGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936 ||||| || | ||||| || | | || || ||| || | ||| | Sbjct 8331 GGGCAGAATAATGACCAGTCACCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGGAATC 8272 Query 155937 CAAATAGCATAGAAAAGGTCCCTTGCC---TTTGACTCCTCATCGCCGTGATTCTTCCGT 155993 |||| | | ||||| | ||| | || ||| || || | |||||||| || | | Sbjct 8271 CAAAGACCGTAGAACAAGTCACGGGCACGATTT---TCTTCTTTACCGTGATTTTTTCTT 8215 Query 155994 AGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCA 156053 || | ||| ||||| ||| || | ||| ||| || || || || || || || Sbjct 8214 AGGTTTAAAAATTCAAAAATGTCGGCATGCCATGGTTCAAGGTAAATGGCGAAGGCGCCT 8155 Query 156054 TTCC---TCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATA 156110 | | ||||| || || || || || | ||| || | ||||| || ||||| Sbjct 8154 GGACGTTTGTTGCCGCCTTGGTCGACGTATCTAGCGGTAGTGTTGAATACTTGGAGCATT 8095 Query 156111 GGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACA 156170 |||| ||| || || ||||| |||||||||||| || | || |||| || |||| | Sbjct 8094 GGAACAATTCCGTTCGAAGTACCATTGGTTCCGGCGATGTAAGAGCCAGTTGCACGAATA 8035 Query 156171 TTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACA 156230 || || ||| ||| ||||| ||||| | ||||||| |||| |||||||| | | Sbjct 8034 TTGTGGATACTTAGACCAATTCCACCAGCAGATTTAGAGATTTTAGCGCATTGGGAGATA 7975 Query 156231 GTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAAT 156290 |||| |||||||||| || || ||||| | ||||| ||| | |||| ||||||| Sbjct 7974 GTATCATAAATACCTTCGATGGAGTCATCCTGCATTGTTAGCAAGAAGCAGGAACTTAGC 7915 Query 156291 TGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAA 156341 ||||| || ||||||| |||||| |||||||| | |||||| ||||| Sbjct 7914 TGAGGACGATTAGTTCCAGAGTTGAAAAGTGTAGGAGAGGCATGAGTAAAA 7864 >seq157 Length=27859 Score = 111 bits (122), Expect = 5e-19 Identities = 218/318 (69%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 |||||||| ||| |||||||| || || || || | | || |||| || | | ||| | Sbjct 15908 TTTACCAATAGCGTCAATTTCATCGATAAATATAATGCTAGGGGAATGTTTTTTAGCATT 15967 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 ||||| || || | |||||| || || |||| || ||| ||||||| ||||||||||| Sbjct 15968 AGCAAACAAATCGCGTACACGAGAAGCACCAACTCCGACAAACATTTCAACAAATTCAGA 16027 Query 289146 AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | | ||| || ||||| || ||||| || || || | || ||||| || Sbjct 16028 ACCACTCACTGAAAAGAATGGAACTCCAGCTTCACCAGCAGTGGCTTTAGCAAGAAGGGT 16087 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 ||||| |||||||||||||| ||||| | || |||| | || || ||| || Sbjct 16088 TTTACCAGTTCCAGGTGGTCCACTTAATATGGCACCTCTTGGAATCTTGGCACCA--AGT 16145 Query 289266 CTT--ATATTTCTCAGGGCTCTTTAAAAATTCT-ACAATTTCCTCAAGTTCATATTTTGC 289322 ||| || || || ||||| |||| || |||| |||| | ||| | ||| || Sbjct 16146 CTTTCGTAACGAGCA-GGTTCTTTCAAAAAGCTGACAAATTCCATGATTTCTTCTTTGGC 16204 Query 289323 CTCATCACATCCTGCTAC 289340 |||||||| || || || Sbjct 16205 TTCATCACAACCAGCAAC 16222 >seq5171 Length=13349 Score = 96.9 bits (106), Expect = 1e-14 Identities = 129/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 251486 CACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAG 251545 ||||||| || ||||||||||| || ||||| || |||||||| | ||||||||| || | Sbjct 8220 CACCGTGGGATATCATACAATCGCGTTCCATCTCTCCGAAACGCAAACCACCATCACGGG 8279 Query 251546 CCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCG-GCTA-TG 251603 ||||| || | ||||||||||| ||| | | ||| || ||||| || | || Sbjct 8280 ATCTACCTTCAACCGGCTGACGAGTAAGAATTTGTACAGGTCC--ACGAGCGCGCGAGTG 8337 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 || || | ||||||||||| | ||||||||| ||| ||||| | ||||| Sbjct 8338 AATTTTGTCGTCAACCATATGCTTCAAACGCTGGTAATATGTTGGACCAAGGAAGA 8393 Score = 84.2 bits (92), Expect = 6e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 233274 CACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTTG 233333 ||||||| | ||||||||||| |||||||| || || | ||||| |||||||||| | Sbjct 8220 CACCGTGGGATATCATACAATCGCGTTCCATCTCTCCGAAACGCAAACCACCATCACGGG 8279 Query 233334 ACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTAA 233393 | ||||| | || | |||||||| | || | || || |||| || | | || Sbjct 8280 ATCTACCTTCAACCGGCTGACGAGTAAGAATTTGTACAGGTCCACGAGCGCGCGAGTGAA 8339 Query 233394 TTTTATCTTTAACCATATGCTTCA 233417 |||| || | |||||||||||||| Sbjct 8340 TTTTGTCGTCAACCATATGCTTCA 8363 >seq2270 Length=9805 Score = 86.0 bits (94), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 301816 ATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAG 301875 ||||||| || || || ||||| | || ||||| || || | |||||||||||| Sbjct 6749 ATTTCTTTAAGTCGAGGTACACCGAGTGTGACGTTT---TTAGAAGACACACCAGCAAAG 6693 Query 301876 TGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATA 301935 |||||||| || ||||| | ||||||| ||||| |||||| ||| || | | || Sbjct 6692 TGGAAAGTGTTAAGAGTCATCTGAGTAGCTGGCTGACCAATTGATTGGGCTGATAAAGTA 6633 Query 301936 CCAACCATTTCTCCTGGTGCTAC 301958 || ||||||||||| || | ||| Sbjct 6632 CCTACCATTTCTCCAGGAGATAC 6610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471671471969413