Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2890 109 7e-18 seq5440 105 8e-17 seq5042 86.0 8e-11 >seq2890 Length=18097 Score = 109 bits (120), Expect = 7e-18 Identities = 171/243 (70%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 1573968 GAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATC 1574027 ||| | |||||||| || |||||| || || |||||| |||| || |||||||| | Sbjct 16482 GAGTCAGTGCTCGAGCTTAACGCGAGTGATGATCGCGGCATCGAAGTGGTGCGCAACAAG 16423 Query 1574028 ATCAAGCACCACGCCTCCAAGAGGATCGACCT----GCCGCCCGGACGCCACAAGGTGAT 1574083 ||||||| || |||| | | || | || ||| || |||||| |||| Sbjct 16422 ATCAAGCTGTTTGCGCAGAAGAAGCT-GAGTTTTATGCGGCCGGGCATGCACAAGCTGAT 16364 Query 1574084 CATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCAT 1574143 || ||||||||||| ||| | | ||| ||| || ||||| |||||||| || ||| Sbjct 16363 AATACTCGACGAGGCGGACAGTATGACGACGGGCGCGCAGCAAGCCCTGCGCCGCATCAT 16304 Query 1574144 GGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCAT 1574203 ||| | ||| |||||||||||| ||||| | |||||||| |||||| | |||| Sbjct 16303 GGAGATATACAGCAACACGACGCGGTTTGCAATTGCGTGCAATTTGTCGTCAAAAATCAT 16244 Query 1574204 CGA 1574206 ||| Sbjct 16243 CGA 16241 >seq5440 Length=19520 Score = 105 bits (116), Expect = 8e-17 Identities = 170/243 (70%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 1573968 GAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATC 1574027 ||| | |||||||| || |||||| || || |||||| |||| || |||||||| | Sbjct 710 GAGTCAGTGCTCGAGCTTAACGCGAGTGATGATCGCGGCATCGAAGTGGTGCGCAACAAG 651 Query 1574028 ATCAAGCACCACGCCTCCAAGAGGATCGACCT----GCCGCCCGGACGCCACAAGGTGAT 1574083 ||||||| || |||| | | || | || ||| || |||||| |||| Sbjct 650 ATCAAGCTGTTTGCGCAGAAGAAGCT-GAGTTTTATGCGGCCGGGCATGCACAAGCTGAT 592 Query 1574084 CATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCAT 1574143 || ||||||||||| ||| | | ||| ||| || ||||| |||||||| || || Sbjct 591 AATACTCGACGAGGCGGACAGTATGACGACGGGCGCGCAGCAAGCCCTGCGCCGCATTAT 532 Query 1574144 GGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCAT 1574203 ||| | ||| |||||||||||| ||||| | |||||||| |||||| | |||| Sbjct 531 GGAGATATACAGCAACACGACGCGGTTTGCAATTGCGTGCAATTTGTCGTCAAAAATCAT 472 Query 1574204 CGA 1574206 ||| Sbjct 471 CGA 469 >seq5042 Length=7215 Score = 86.0 bits (94), Expect = 8e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| | || ||| | ||||||| || | || |||||||||||||| ||||| Sbjct 5696 ACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAGTAAGACCGGGCATGAGGCCACGCTT 5755 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACG 869290 |||||||| ||||||||| ||| ||| ||| |||||||| || ||| Sbjct 5756 TTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGAAGAAGATGCCTTCAACG 5807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106503280771433