Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq7711 161 9e-35 seq6735 161 9e-35 seq1303 161 9e-35 seq5539 152 5e-32 seq923 125 6e-24 >seq7711 Length=15848 Score = 161 bits (178), Expect = 9e-35 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| ||||||||||||||||||| ||||| || ||| || || Sbjct 10865 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 10806 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || ||||||||||||||||| || |||||||| ||||| ||||| Sbjct 10805 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 10746 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || || || || || || |||| ||| | | | | || || || ||| Sbjct 10745 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAAC 10686 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||||||||| || || |||||||| Sbjct 10685 ATCCAAAAGGAATCTACCCTCCACTTGGT 10657 >seq6735 Length=1584 Score = 161 bits (178), Expect = 9e-35 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| ||||||||||||||||||| ||||| || ||| || || Sbjct 1212 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 1153 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || ||||||||||||||||| || |||||||| ||||| ||||| Sbjct 1152 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 1093 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || || || || || || |||| ||| | | | | || || || ||| Sbjct 1092 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAAC 1033 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||||||||| || || |||||||| Sbjct 1032 ATCCAAAAGGAATCTACCCTCCACTTGGT 1004 >seq1303 Length=22699 Score = 161 bits (178), Expect = 9e-35 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| ||||||||||||||||||| ||||| || ||| || || Sbjct 4419 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 4478 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || ||||||||||||||||| || |||||||| ||||| ||||| Sbjct 4479 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 4538 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || || || || || || |||| ||| | | | | || || || ||| Sbjct 4539 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAAC 4598 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||||||||| || || |||||||| Sbjct 4599 ATCCAAAAGGAATCTACCCTCCACTTGGT 4627 >seq5539 Length=6842 Score = 152 bits (168), Expect = 5e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || |||||||| || || || ||||||||| | | Sbjct 1193 ATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACTCTTGAAGTAGAATCTTCT 1134 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || |||||||| |||||||| || |||||||| ||||| ||||| Sbjct 1133 GATTCTATTGAGAATGTTAAACAAAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 1074 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||| || ||||| ||||| || || ||| | | | |||| ||||| ||| Sbjct 1073 CAACGCTTGATTTTCGCCGGTAAACAACTAGAAGATGGCCGTACCTTGTCCGATTACAAC 1014 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| ||||| || || |||||||| Sbjct 1013 ATTCAAAAAGAATCTACTCTTCACTTGGT 985 >seq923 Length=21762 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| ||||| ||||| ||||| || || ||||| ||| | | Sbjct 10814 ATGCAAATTTTCGTCAAAACTCTAACAGGTAAGACTATCACCCTTGAAGTCGAATCTTCA 10755 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || || || ||||||||||| |||||||| || || || || Sbjct 10754 GACACAATTGACAACGTCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 10695 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || || || |||||||| || || | | |||| || || ||| Sbjct 10694 CAACGTCTCATTTTCGCAGGTAAACAGCTCGAAGACGGCCGCACTTTGTCTGACTACAAC 10635 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||| || || |||||||| Sbjct 10634 ATCCAAAAAGAATCCACTCTCCACTTGGT 10606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449854021793720