Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq7711 111 1e-19 seq6735 111 1e-19 seq1303 111 1e-19 seq5539 91.5 1e-13 seq923 86.0 5e-12 >seq7711 Length=15848 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 ||||| || ||||||||||| |||||||| ||||| |||||| |||| || | ||| Sbjct 10865 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTC- 10807 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| | ||| | || ||||| ||||| || || ||||| | || ||||| Sbjct 10806 CGACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 10747 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||||||||| || ||||| || |||| |||| | || | | || ||||| Sbjct 10746 GCAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAA 10687 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| ||||| |||||||| | ||| |||| ||||||| || || || Sbjct 10686 CATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGACTCCGTGGTGG 10639 >seq6735 Length=1584 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 ||||| || ||||||||||| |||||||| ||||| |||||| |||| || | ||| Sbjct 1212 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTC- 1154 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| | ||| | || ||||| ||||| || || ||||| | || ||||| Sbjct 1153 CGACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 1094 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||||||||| || ||||| || |||| |||| | || | | || ||||| Sbjct 1093 GCAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAA 1034 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| ||||| |||||||| | ||| |||| ||||||| || || || Sbjct 1033 CATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGACTCCGTGGTGG 986 >seq1303 Length=22699 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 ||||| || ||||||||||| |||||||| ||||| |||||| |||| || | ||| Sbjct 4419 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTC- 4477 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| | ||| | || ||||| ||||| || || ||||| | || ||||| Sbjct 4478 CGACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 4537 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||||||||| || ||||| || |||| |||| | || | | || ||||| Sbjct 4538 GCAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAA 4597 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| ||||| |||||||| | ||| |||| ||||||| || || || Sbjct 4598 CATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGACTCCGTGGTGG 4645 >seq5539 Length=6842 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326 |||| |||||| || ||||| || ||| | || || |||||||| || | ||| || Sbjct 1199 TTTAGAATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACTCTTGAAGTAGAA 1140 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 || ||| || | | | || ||||| || || || || ||||| | || Sbjct 1139 TCTTCTGATTCTATTGAGAATGTTAAACAAAAAATCCAAGATAAGGAAGGAATTCCTCCA 1080 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||| ||| | | |||| || |||||||| || || |||| | | || || | ||| Sbjct 1079 GATCAGCAACGCTTGATTTTCGCCGGTAAACAACTAGAAGATGGCCGTACCTTGTCCGAT 1020 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||||||||||||||||||||| | ||| |||| Sbjct 1019 TACAACATTCAAAAAGAATCTACTCTTCACTTGGT 985 >seq923 Length=21762 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || ||||||||| |||| || || || || ||| | ||| || || Sbjct 10817 AACATGCAAATTTTCGTCAAAACTCTAACAGGTAAGACTATCACCCTTGAAGTCGAATCT 10758 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || | | | | || || ||||| || ||||| ||||| | || || Sbjct 10757 TCAGACACAATTGACAACGTCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCACCAGAC 10698 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||| | || |||| || ||||||||||| || || | | | || || | || ||| Sbjct 10697 CAGCAACGTCTCATTTTCGCAGGTAAACAGCTCGAAGACGGCCGCACTTTGTCTGACTAC 10638 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||||||||| || | ||| |||| || | || |||| || Sbjct 10637 AACATCCAAAAAGAATCCACTCTCCACTTGGTTCTACGTCTCAGAGGCGG 10588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412802610852257