Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2890 95.1 2e-13 seq5440 91.5 2e-12 >seq2890 Length=18097 Score = 95.1 bits (104), Expect = 2e-13 Identities = 184/267 (69%), Gaps = 11/267 (4%) Strand=Plus/Minus Query 2019105 GAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATC 2019164 ||| | |||||||| || || ||| || || |||||| | || || ||||| | | Sbjct 16482 GAGTCAGTGCTCGAGCTTAACGCGAGTGATGATCGCGGCATCGAAGTGGTGCGCAACAAG 16423 Query 2019165 ATCAAGCATCACGCTT-CGAA-AAGAATC-GACCT----GCCGCCCGGCCGCCACAAGGT 2019217 ||||||| | || || | ||||| | || | || ||| ||| |||||| | Sbjct 16422 ATCAAGCT----GTTTGCGCAGAAGAAGCTGAGTTTTATGCGGCCGGGCATGCACAAGCT 16367 Query 2019218 GATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGAC 2019277 ||| || ||||| ||||| ||| | | ||| ||| || ||||| ||||| || | Sbjct 16366 GATAATACTCGACGAGGCGGACAGTATGACGACGGGCGCGCAGCAAGCCCTGCGCCGCAT 16307 Query 2019278 CATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGT 2019337 |||||| | |||| |||||||||||||||||| | || ||||| |||||| | | Sbjct 16306 CATGGAGATATACAGCAACACGACGCGGTTTGCAATTGCGTGCAATTTGTCGTCAAAAAT 16247 Query 2019338 CATCGAAGCCCTCCAGAGCCGTTGCGC 2019364 ||||||| | | |||||| | || || Sbjct 16246 CATCGAACCGATACAGAGCAGATGTGC 16220 >seq5440 Length=19520 Score = 91.5 bits (100), Expect = 2e-12 Identities = 183/267 (69%), Gaps = 11/267 (4%) Strand=Plus/Minus Query 2019105 GAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATC 2019164 ||| | |||||||| || || ||| || || |||||| | || || ||||| | | Sbjct 710 GAGTCAGTGCTCGAGCTTAACGCGAGTGATGATCGCGGCATCGAAGTGGTGCGCAACAAG 651 Query 2019165 ATCAAGCATCACGCTT-CGAA-AAGAATC-GACCT----GCCGCCCGGCCGCCACAAGGT 2019217 ||||||| | || || | ||||| | || | || ||| ||| |||||| | Sbjct 650 ATCAAGCT----GTTTGCGCAGAAGAAGCTGAGTTTTATGCGGCCGGGCATGCACAAGCT 595 Query 2019218 GATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGAC 2019277 ||| || ||||| ||||| ||| | | ||| ||| || ||||| ||||| || | Sbjct 594 GATAATACTCGACGAGGCGGACAGTATGACGACGGGCGCGCAGCAAGCCCTGCGCCGCAT 535 Query 2019278 CATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGT 2019337 ||||| | |||| |||||||||||||||||| | || ||||| |||||| | | Sbjct 534 TATGGAGATATACAGCAACACGACGCGGTTTGCAATTGCGTGCAATTTGTCGTCAAAAAT 475 Query 2019338 CATCGAAGCCCTCCAGAGCCGTTGCGC 2019364 ||||||| | | |||||| | || || Sbjct 474 CATCGAACCGATACAGAGCAGATGTGC 448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915422103526811