Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq7711 134 9e-27 seq6735 134 9e-27 seq1303 134 9e-27 seq5539 111 1e-19 seq923 98.7 6e-16 >seq7711 Length=15848 Score = 134 bits (148), Expect = 9e-27 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||||| ||| | ||| ||||| || ||||| ||||| || ||| |||| || Sbjct 10651 CTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCA 10710 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||| |||||| || ||||| || |||| |||||| ||| | || | || ||||| Sbjct 10711 TCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTA 10770 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || |||||||||||| | | || || || || ||||| || | ||| || Sbjct 10771 TCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATA 10830 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATA 34981 || || || || | ||| || |||||||||||||||||| Sbjct 10831 GTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATGATA 10869 >seq6735 Length=1584 Score = 134 bits (148), Expect = 9e-27 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||||| ||| | ||| ||||| || ||||| ||||| || ||| |||| || Sbjct 998 CTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCA 1057 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||| |||||| || ||||| || |||| |||||| ||| | || | || ||||| Sbjct 1058 TCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTA 1117 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || |||||||||||| | | || || || || ||||| || | ||| || Sbjct 1118 TCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATA 1177 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATA 34981 || || || || | ||| || |||||||||||||||||| Sbjct 1178 GTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATGATA 1216 >seq1303 Length=22699 Score = 134 bits (148), Expect = 9e-27 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||||| ||| | ||| ||||| || ||||| ||||| || ||| |||| || Sbjct 4633 CTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCA 4574 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||| |||||| || ||||| || |||| |||||| ||| | || | || ||||| Sbjct 4573 TCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTA 4514 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || |||||||||||| | | || || || || ||||| || | ||| || Sbjct 4513 TCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATA 4454 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATA 34981 || || || || | ||| || |||||||||||||||||| Sbjct 4453 GTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATGATA 4415 >seq5539 Length=6842 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || || || |||||||| || || || | | | || |||| Sbjct 982 AGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTACGGCCATCT 1041 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || |||||||| |||| |||||||| ||| | || | || ||||| || Sbjct 1042 TCTAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCT 1101 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||||||||| || || || || || ||| | || || |||| ||||||| Sbjct 1102 TGGATTTTTTGTTTAAC--ATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGG 1159 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || || || ||||||||||| |||||||| Sbjct 1160 TTTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 1193 >seq923 Length=21762 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| || || || ||||| ||||| |||| |||| | || Sbjct 10375 AGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAAGTGCGGCCGTCT 10434 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || || ||||| || || |||||||||||| | || | || |||||||| Sbjct 10435 TCAAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 10494 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || |||||| | || | || | ||||| |||| ||| || ||| Sbjct 10495 TGAATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTC 10554 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||||||||| || || ||||| Sbjct 10555 TTACCTGTAAGGGTCTTTACGAAAATTTGCAT 10586 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| || || || ||||| ||||| || | |||| | || Sbjct 10603 AGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCGTCT 10662 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || || ||||| || || |||||||||||| | || | || |||||||| Sbjct 10663 TCGAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 10722 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || |||||| | || | || | ||||| |||| ||| || ||| Sbjct 10723 TGGATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTC 10782 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || || || || || || || |||||| Sbjct 10783 TTACCTGTTAGAGTTTTGACGAAAATTTGCATG 10815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325662041266631