Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5539 178 1e-39 seq7711 140 2e-28 seq6735 140 2e-28 seq1303 140 2e-28 seq923 122 7e-23 >seq5539 Length=6842 Score = 178 bits (196), Expect = 1e-39 Identities = 177/228 (78%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || ||||||||||||||||| ||||| | | ||| || Sbjct 978 ACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTACGGCC 1037 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| || || | ||||| | ||||||||| || ||||| || || || Sbjct 1038 ATCTTCTAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTT 1097 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | ||||||||| ||| | || | || |||||| |||||||||||||||||| Sbjct 1098 ATCTTGGATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTAT 1157 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT-TTAAAACGTA 29797 ||||| || || | || || ||||| ||||||||| | |||||||| Sbjct 1158 GGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATTCTAAAAACGTA 1205 >seq7711 Length=15848 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || || ||||| ||||| ||||| || || | | ||||||| ||| Sbjct 10654 AGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 10713 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | ||| || || || | || | |||||||||||| || ||||| || || || ||| Sbjct 10714 TCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCT 10773 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||||||||||| |||| | | ||| || ||| || || || || |||||| Sbjct 10774 TGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTT 10833 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||||||||| ||||| |||||||| Sbjct 10834 TTACCGGTTAAGGTTTTGACAAAGATCTGCAT 10865 >seq6735 Length=1584 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || || ||||| ||||| ||||| || || | | ||||||| ||| Sbjct 1001 AGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 1060 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | ||| || || || | || | |||||||||||| || ||||| || || || ||| Sbjct 1061 TCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCT 1120 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||||||||||| |||| | | ||| || ||| || || || || |||||| Sbjct 1121 TGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTT 1180 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||||||||| ||||| |||||||| Sbjct 1181 TTACCGGTTAAGGTTTTGACAAAGATCTGCAT 1212 >seq1303 Length=22699 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || || ||||| ||||| ||||| || || | | ||||||| ||| Sbjct 4630 AGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 4571 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | ||| || || || | || | |||||||||||| || ||||| || || || ||| Sbjct 4570 TCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCT 4511 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||||||||||| |||| | | ||| || ||| || || || || |||||| Sbjct 4510 TGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTT 4451 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||||||||| ||||| |||||||| Sbjct 4450 TTACCGGTTAAGGTTTTGACAAAGATCTGCAT 4419 >seq923 Length=21762 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| || ||||| || || |||||||||||||| ||||| || || | Sbjct 10588 CCGCCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAC 10647 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || ||||| ||||| || || | || | | |||||| || || || Sbjct 10648 AAAGTGCGGCCGTCTTCGAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGG 10707 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | ||| || ||||| | || | ||||| ||| ||| ||| Sbjct 10708 ATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACT 10767 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || ||||| || || |||| ||||| || || || ||||| || Sbjct 10768 TCAAGGGTGATAGTCTTACCTGTTAGAGTTTTGACGAAAATTTGCATGTT 10817 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| || ||||| || || |||||||||||||| ||||| || || | Sbjct 10360 CCACCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAT 10419 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || ||||| || || | || | | |||||| || || || Sbjct 10420 AAAGTGCGGCCGTCTTCAAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGG 10479 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | ||| || ||||| | || | ||||| ||| ||| ||| Sbjct 10480 ATTCCTTCCTTGTCTTGAATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACT 10539 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || ||||| || || || | ||| || || || || ||||| Sbjct 10540 TCAAGGGTGATAGTCTTACCTGTAAGGGTCTTTACGAAAATTTGCAT 10586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385182819537609