Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5539 185 2e-41 seq923 156 8e-33 seq7711 131 3e-25 seq6735 131 3e-25 seq1303 131 3e-25 >seq5539 Length=6842 Score = 185 bits (204), Expect = 2e-41 Identities = 184/237 (78%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 82575 TATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTA 82634 || |||| ||| || | | ||| ||||| ||||| |||||||||||||| || || || Sbjct 959 TAACACC-ACCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTG 1017 Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694 ||||| || | | | || |||||||||||||| || || || || | | ||| ||| Sbjct 1018 TAATCGGACAAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGA 1077 Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754 |||||||| ||||||||||||||||| || ||| ||| ||||| ||||| | |||| | Sbjct 1078 TCTGGAGGAATTCCTTCCTTATCTTGGATTTTTTGTTTAACATTCTCAATAGAATCAGAA 1137 Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||||||| | |||||| || || ||||| | ||||||||||| ||||||||| Sbjct 1138 GATTCTACTTCAAGAGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATT 1194 >seq923 Length=21762 Score = 156 bits (172), Expect = 8e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | ||| ||||| ||||| ||||| |||||||| || || || || |||| Sbjct 10358 TACCACCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAG 10417 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | | |||||||| || ||||| || || || || || | ||| || ||||| | Sbjct 10418 ATAAAGTGCGGCCGTCTTCAAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTG 10477 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | ||||||||||| |||||||| || ||| || || || ||||| || || || ||| Sbjct 10478 GGATTCCTTCCTTGTCTTGAATTTTCTGC-TTGACGTTGTCAATTGTGTCTGAAGATTCG 10536 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| | || || ||||| ||||| | |||||||| || || ||||| Sbjct 10537 ACTTCAAGGGTGATAGTCTTACCTGTAAGGGTCTTTACGAAAATTTGCAT 10586 Score = 138 bits (152), Expect = 2e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | ||| ||||| ||||| ||||| |||||||| || || || || |||| Sbjct 10586 TACCGCCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAG 10645 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | |||||||| || ||||| || || || || || | ||| || ||||| | Sbjct 10646 ACAAAGTGCGGCCGTCTTCGAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTG 10705 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | ||||||||||| ||||| || || ||| || || || ||||| || || || ||| Sbjct 10706 GGATTCCTTCCTTGTCTTGGATTTTCTGC-TTGACGTTGTCAATTGTGTCTGAAGATTCG 10764 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| | || || ||||| ||||| | || || || || || ||||| Sbjct 10765 ACTTCAAGGGTGATAGTCTTACCTGTTAGAGTTTTGACGAAAATTTGCAT 10814 >seq7711 Length=15848 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| || |||||||| || || || || || || || || | | ||| ||| Sbjct 10654 AGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 10713 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | ||| || || || || || |||||||| ||||||||||| ||||||||||||||| Sbjct 10714 TCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCT 10773 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || |||||| ||| || ||||| || | || | ||| || || | || || || Sbjct 10774 TGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTT 10833 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || || || || || || ||||| |||||||| || Sbjct 10834 TTACCGGTTAAGGTTTTGACAAAGATCTGCATGAT 10868 >seq6735 Length=1584 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| || |||||||| || || || || || || || || | | ||| ||| Sbjct 1001 AGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 1060 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | ||| || || || || || |||||||| ||||||||||| ||||||||||||||| Sbjct 1061 TCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCT 1120 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || |||||| ||| || ||||| || | || | ||| || || | || || || Sbjct 1121 TGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTT 1180 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || || || || || || ||||| |||||||| || Sbjct 1181 TTACCGGTTAAGGTTTTGACAAAGATCTGCATGAT 1215 >seq1303 Length=22699 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| || |||||||| || || || || || || || || | | ||| ||| Sbjct 4630 AGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 4571 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | ||| || || || || || |||||||| ||||||||||| ||||||||||||||| Sbjct 4570 TCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCT 4511 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || |||||| ||| || ||||| || | || | ||| || || | || || || Sbjct 4510 TGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTT 4451 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || || || || || || ||||| |||||||| || Sbjct 4450 TTACCGGTTAAGGTTTTGACAAAGATCTGCATGAT 4416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981729720206911