Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2634 174 4e-38 seq2270 102 2e-16 seq6395 86.0 1e-11 seq3064 86.0 1e-11 >seq2634 Length=12318 Score = 174 bits (192), Expect = 4e-38 Identities = 448/681 (66%), Gaps = 6/681 (1%) Strand=Plus/Plus Query 110465 TATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTG 110524 || |||||| ||||||| || || ||| | ||||||||| | || | ||| || Sbjct 7867 TACTCATGCCTCTCCTACACTTTTCAACTCTGGAACTAATCGTCCTCAGCTAAGTTCCTG 7926 Query 110525 CTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC 110584 ||| | ||| ||| | ||||| || || ||||||||||||||| || | || Sbjct 7927 CTTCTTGCTAACAATGCAGGATGACTCCATCGAAGGTATTTATGATACTATCTCCCAATG 7986 Query 110585 TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAA 110644 ||| || |||||| |||| ||||||||| | | || ||||||| ||| Sbjct 7987 CGCTAAAATCTCTAAATCTGCTGGTGGAATTGGTCTAAGTATCCACAATATTCGTGCAAC 8046 Query 110645 AGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGT 110704 || | | ||||| | | || ||| |||| | ||| ||||||||||| | ||| Sbjct 8047 TGGCTCTTACATCGCCGGAACCAATGGTACTTCGAACGGAATTGTTCCAATGCTCCAAGT 8106 Query 110705 CTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGC 110761 |||||| || || | ||| || | ||||| || || | | | ||| | || || Sbjct 8107 ATTCAACACTACCGCTAGATACGTCGACCAAGGCGGCAACAAACGTCCAGGCGCCTTCGC 8166 Query 110762 TATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCA 110821 || || || ||||| |||||| | || || |||||||| ||| | || | |||||||| Sbjct 8167 CATTTACCTTGAACCATGGCATGCCGACATTTTTGAATTTTTAAACCTAAGAAAAAATCA 8226 Query 110822 AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATT 110881 || |||||| | | || ||||| || || || | | |||||| | || | || Sbjct 8227 CGGTAAAGAAGAAAATCGTGCCCGTGACTTGTTCTACGGTCTTTGGATTCCTGACCTTTT 8286 Query 110882 CATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGG 110941 |||| || ||| ||||| || ||||| | | || || ||| | ||||| Sbjct 8287 CATGCGCCGCGTTTTGGAAAACGGTGACTGGTCATTATTCTGCCCCCATGAAGCCCCTGG 8346 Query 110942 TCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAA---GA 110998 |||| |||| || | || | |||| || || || ||| |||||| ||||| || Sbjct 8347 TCTAGCTGACGTTTGGGGCGAGAAGTTCGATGAACTCTACCTAAAATACGAAAACACTGA 8406 Query 110999 AGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACA 111058 ||| |||||||| || | || || |||| |||| | || | || || || Sbjct 8407 AGGTCTTCCTCGCAAACGCATCACTGCCCAGCAACTCTGGTACGCTATTTTAGATTCCCA 8466 Query 111059 AGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCA 111118 | | |||||||||||||| || || | || ||||| | ||| |||||||||| || Sbjct 8467 AATCGAAACTGGAACTCCATACATGCTCTACAAAGACGCTTGTAACGGCAAATCTAACCA 8526 Query 111119 AATGAATTTAGGAACAATTAA 111139 | || | ||||||||||| Sbjct 8527 ACAAAACCTCGGAACAATTAA 8547 >seq2270 Length=9805 Score = 102 bits (112), Expect = 2e-16 Identities = 148/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 305345 CAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTG 305404 ||||| || || ||||||||||||||||||| |||| |||||||| | || | Sbjct 4753 CAACCTTCTCTCCATAAAATGTCTATGATGGGTCATCGCGTCAAAGTTATGCCTTACTCA 4812 Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTA----CGCCTTATAATGCGGATTTTGATGGAGA 305460 |||||| ||||||| | | || ||| | ||||||||||| ||||||||||| || Sbjct 4813 ACATTTAGATTAAACCT---TTCT-GTAACATCTCCTTATAATGCTGATTTTGATGGTGA 4868 Query 305461 TGAAATGAATATGCATGTACCTCAATCAAAGGTTACAATGACTGAATTATCAGAAATATG 305520 |||||||||| | ||| | || ||||| | | || ||||| | | ||||| || Sbjct 4869 TGAAATGAATTTACATCTTCCCCAATCTGAAGAAACTCGTGCTGAAATTACTGAAATTTG 4928 Query 305521 TTCTGTATCAAAACTTATCATTTCTCC 305547 | || |||||| ||||| ||||| Sbjct 4929 TATGGTTCCAAAACAAATCATATCTCC 4955 >seq6395 Length=13347 Score = 86.0 bits (94), Expect = 1e-11 Identities = 312/473 (66%), Gaps = 28/473 (6%) Strand=Plus/Plus Query 279875 GATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTA 279934 ||||| || |||||| | ||||| ||||| || | | || || |||||||| ||| | Sbjct 11710 GATGGGTTTAAACCTACCCAGCGCAAGATCATTTATGGCTGCTTTAAAAGAAACTTG--A 11767 Query 279935 AAGG--AAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATC 279992 |||| |||| || ||| | || |||||| | || || || | | ||| |||| Sbjct 11768 AAGGTGAAATCAAAGTCGCTGCTCTTGCTGGTTATATCTCTGAGCAAACTGCTTACCATC 11827 Query 279993 ACGGTGAAGCGTCTCTT---CAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTAT-GGCT 280048 | |||||| |||||| ||| ||||| | | | | || | |||||||| ||| Sbjct 11828 ATGGTGAACAATCTCTTACCCAAT---CTATTATCGCTATGGCTTACGATTTTATAGGCA 11884 Query 280049 TCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAA--TG 280106 ||| ||| | |||||| | ||| || ||||| ||||||||| | ||| |||| || Sbjct 11885 GCAA-CAATCTCAATCTGTTAGAACCTAAAGGTCAGTTTGGTTCTAG-ATT-ACAAGGTG 11941 Query 280107 GAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATATTAC--AAACAA 280164 | ||||| || || ||||||||||| || || | | || | ||||| Sbjct 11942 GTAAAGACTCTGCAAGCGCTCGTTACATTTTCACTACGCTAGCTAAACTTTCGAGAACAA 12001 Query 280165 GTTATTTATCAATTCTGATAAT-GCT--TCATTAGAGTGGCTAGAGGATGATGGTCTTGC 280221 || |||| ||||| || ||| | | | || | | ||||||||||| Sbjct 12002 -----TTTTCAACCCTGATGATAGCTCCTTACTTGAATATATCGAGGATGATGGCAAAAA 12056 Query 280222 TATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAAGG 280281 ||||||| | | || ||| ||| | || ||||| || |||||||| || |||| Sbjct 12057 AGTTGAACCTAATTGGTACATTCCTATTGTTCCAATGATACTCATTAATGGTTCTGAAGG 12116 Query 280282 AATTGGAACAGGTT-ATTCTACATCTATCCCAATGTACAATCCAATTGATATT 280333 |||||||| |||| | || | |||||| ||||||||| ||||||| Sbjct 12117 TATTGGAACTGGTTGGAGCACCAACATTCCCAA-CTACAATCCATATGATATT 12168 >seq3064 Length=17530 Score = 86.0 bits (94), Expect = 1e-11 Identities = 312/473 (66%), Gaps = 28/473 (6%) Strand=Plus/Plus Query 279875 GATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTA 279934 ||||| || |||||| | ||||| ||||| || | | || || |||||||| ||| | Sbjct 11721 GATGGGTTTAAACCTACCCAGCGCAAGATCATTTATGGCTGCTTTAAAAGAAACTTG--A 11778 Query 279935 AAGG--AAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATC 279992 |||| |||| || ||| | || |||||| | || || || | | ||| |||| Sbjct 11779 AAGGTGAAATCAAAGTCGCTGCTCTTGCTGGTTATATCTCTGAGCAAACTGCTTACCATC 11838 Query 279993 ACGGTGAAGCGTCTCTT---CAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTAT-GGCT 280048 | |||||| |||||| ||| ||||| | | | | || | |||||||| ||| Sbjct 11839 ATGGTGAACAATCTCTTACCCAAT---CTATTATCGCTATGGCTTACGATTTTATAGGCA 11895 Query 280049 TCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAA--TG 280106 ||| ||| | |||||| | ||| || ||||| ||||||||| | ||| |||| || Sbjct 11896 GCAA-CAATCTCAATCTGTTAGAACCTAAAGGTCAGTTTGGTTCTAG-ATT-ACAAGGTG 11952 Query 280107 GAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATATTAC--AAACAA 280164 | ||||| || || ||||||||||| || || | | || | ||||| Sbjct 11953 GTAAAGACTCTGCAAGCGCTCGTTACATTTTCACTACGCTAGCTAAACTTTCGAGAACAA 12012 Query 280165 GTTATTTATCAATTCTGATAAT-GCT--TCATTAGAGTGGCTAGAGGATGATGGTCTTGC 280221 || |||| ||||| || ||| | | | || | | ||||||||||| Sbjct 12013 -----TTTTCAACCCTGATGATAGCTCCTTACTTGAATATATCGAGGATGATGGCAAAAA 12067 Query 280222 TATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAAGG 280281 ||||||| | | || ||| ||| | || ||||| || |||||||| || |||| Sbjct 12068 AGTTGAACCTAATTGGTACATTCCTATTGTTCCAATGATACTCATTAATGGTTCTGAAGG 12127 Query 280282 AATTGGAACAGGTT-ATTCTACATCTATCCCAATGTACAATCCAATTGATATT 280333 |||||||| |||| | || | |||||| ||||||||| ||||||| Sbjct 12128 TATTGGAACTGGTTGGAGCACCAACATTCCCAA-CTACAATCCATATGATATT 12179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186694968403789