Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq7711 114 3e-20 seq6735 114 3e-20 seq1303 114 3e-20 seq5539 111 4e-19 >seq7711 Length=15848 Score = 114 bits (126), Expect = 3e-20 Identities = 178/253 (70%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 206138 TTTTAAGAAATATATAAAGTAAGGCTAAAATGTACCAGATATTTTGCAAAACGCTCACAG 206197 |||||| ||| ||||| | || || ||| ||||| ||| |||||| | || | Sbjct 10891 TTTTAAAAAA---ATAAATTTAGTATATCATG---CAGATCTTTGTCAAAACCTTAACCG 10838 Query 206198 GAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGA 206257 | ||||| || || | || || ||| || ||| | ||||| || || ||||||| Sbjct 10837 GTAAAACTATTACCCTCGAGGTCGAATCCTCCGACTCCATCGAAAACGTCAAACAAAAGA 10778 Query 206258 TTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGT 206317 | ||||| || ||||||||| || || ||||||||||| ||||| || ||||| | Sbjct 10777 TCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAAGACTTATTTTCGCAGGTAAGCAAT 10718 Query 206318 TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTG 206377 |||||||||| | || | |||| |||||| |||| || || ||||| || ||| | | Sbjct 10717 TGGAAGATGGTCGCACCCTCTCCGACTACAACATCCAAAAGGAATCTACCCTCCACTTGG 10658 Query 206378 TTTTGAGACTTCG 206390 | | ||||| || Sbjct 10657 TCCTAAGACTCCG 10645 >seq6735 Length=1584 Score = 114 bits (126), Expect = 3e-20 Identities = 178/253 (70%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 206138 TTTTAAGAAATATATAAAGTAAGGCTAAAATGTACCAGATATTTTGCAAAACGCTCACAG 206197 |||||| ||| ||||| | || || ||| ||||| ||| |||||| | || | Sbjct 1238 TTTTAAAAAA---ATAAATTTAGTATATCATG---CAGATCTTTGTCAAAACCTTAACCG 1185 Query 206198 GAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGA 206257 | ||||| || || | || || ||| || ||| | ||||| || || ||||||| Sbjct 1184 GTAAAACTATTACCCTCGAGGTCGAATCCTCCGACTCCATCGAAAACGTCAAACAAAAGA 1125 Query 206258 TTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGT 206317 | ||||| || ||||||||| || || ||||||||||| ||||| || ||||| | Sbjct 1124 TCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAAGACTTATTTTCGCAGGTAAGCAAT 1065 Query 206318 TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTG 206377 |||||||||| | || | |||| |||||| |||| || || ||||| || ||| | | Sbjct 1064 TGGAAGATGGTCGCACCCTCTCCGACTACAACATCCAAAAGGAATCTACCCTCCACTTGG 1005 Query 206378 TTTTGAGACTTCG 206390 | | ||||| || Sbjct 1004 TCCTAAGACTCCG 992 >seq1303 Length=22699 Score = 114 bits (126), Expect = 3e-20 Identities = 178/253 (70%), Gaps = 6/253 (2%) Strand=Plus/Plus Query 206138 TTTTAAGAAATATATAAAGTAAGGCTAAAATGTACCAGATATTTTGCAAAACGCTCACAG 206197 |||||| ||| ||||| | || || ||| ||||| ||| |||||| | || | Sbjct 4393 TTTTAAAAAA---ATAAATTTAGTATATCATG---CAGATCTTTGTCAAAACCTTAACCG 4446 Query 206198 GAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGA 206257 | ||||| || || | || || ||| || ||| | ||||| || || ||||||| Sbjct 4447 GTAAAACTATTACCCTCGAGGTCGAATCCTCCGACTCCATCGAAAACGTCAAACAAAAGA 4506 Query 206258 TTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGT 206317 | ||||| || ||||||||| || || ||||||||||| ||||| || ||||| | Sbjct 4507 TCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAAGACTTATTTTCGCAGGTAAGCAAT 4566 Query 206318 TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTG 206377 |||||||||| | || | |||| |||||| |||| || || ||||| || ||| | | Sbjct 4567 TGGAAGATGGTCGCACCCTCTCCGACTACAACATCCAAAAGGAATCTACCCTCCACTTGG 4626 Query 206378 TTTTGAGACTTCG 206390 | | ||||| || Sbjct 4627 TCCTAAGACTCCG 4639 >seq5539 Length=6842 Score = 111 bits (122), Expect = 4e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||||| ||| || || ||||| ||||| || ||| | ||||| ||| |||||| Sbjct 1190 CAGAT-TTTTGTAAAGACTCTTACAGGTAAAACCATAACTCTTGAAGTAGAATCTTCTGA 1132 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 | | || || || ||||| || ||||| || ||||||||| || || || Sbjct 1131 TTCTATTGAGAATGTTAAACAAAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAGCA 1072 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || |||||||| || || | |||||||| | || ||| ||||||||||| | Sbjct 1071 ACGCTTGATTTTCGCCGGTAAACAACTAGAAGATGGCCGTACCTTGTCCGATTACAACAT 1012 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || ||||| |||||||||||| | ||| Sbjct 1011 TCAAAAAGAATCTACTCTTCACTTGGTT 984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181703464029829