Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5539 122 8e-23 seq7711 87.8 2e-12 seq6735 87.8 2e-12 seq1303 87.8 2e-12 seq923 87.8 2e-12 >seq5539 Length=6842 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | || ||||||||||||||||| ||| || |||||| |||||| Sbjct 984 AACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTACGGCCATCTTC 1043 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || |||||||||| | || | || || ||||||||||| || ||||| ||||| Sbjct 1044 TAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTG 1103 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||||||||| | | || | || ||| | | || ||||| | || | ||||| Sbjct 1104 GATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGGTTTT 1163 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || ||||| |||| ||||||||||| Sbjct 1164 ACCTGTAAGAGTCTTTACAAAAATCTGCAT 1193 >seq7711 Length=15848 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || || ||||| |||||||||||| | ||| || |||||| Sbjct 10657 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCC 10716 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | || ||||| | | || || | || ||||||||||| || ||||| ||||| Sbjct 10717 AATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 10776 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || |||||||| | | ||| | | |||| | || || |||| || | |||||| Sbjct 10777 ATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTA 10836 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATTAGATTCCTTTT 132142 || || | ||||| | || |||||||||| || || ||| |||| Sbjct 10837 CCGGTTAAGGTTTTGACAAAGATCTGCATGATATACTAAATTTATTTT 10884 >seq6735 Length=1584 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || || ||||| |||||||||||| | ||| || |||||| Sbjct 1004 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCC 1063 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | || ||||| | | || || | || ||||||||||| || ||||| ||||| Sbjct 1064 AATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 1123 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || |||||||| | | ||| | | |||| | || || |||| || | |||||| Sbjct 1124 ATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTA 1183 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATTAGATTCCTTTT 132142 || || | ||||| | || |||||||||| || || ||| |||| Sbjct 1184 CCGGTTAAGGTTTTGACAAAGATCTGCATGATATACTAAATTTATTTT 1231 >seq1303 Length=22699 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || || ||||| |||||||||||| | ||| || |||||| Sbjct 4627 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCC 4568 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | || ||||| | | || || | || ||||||||||| || ||||| ||||| Sbjct 4567 AATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 4508 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || |||||||| | | ||| | | |||| | || || |||| || | |||||| Sbjct 4507 ATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTA 4448 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATTAGATTCCTTTT 132142 || || | ||||| | || |||||||||| || || ||| |||| Sbjct 4447 CCGGTTAAGGTTTTGACAAAGATCTGCATGATATACTAAATTTATTTT 4400 >seq923 Length=21762 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | || |||||||| ||||||||||| || || || ||||| Sbjct 10605 AACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCGTCTTC 10664 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||||||| | | || ||||| || || ||||| || || ||||| || || Sbjct 10665 GAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTG 10724 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| || || | | || | || || | | || ||||| | || | || || Sbjct 10725 GATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTCTT 10784 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| || |||||||| | |||||| |||||| Sbjct 10785 ACCTGTTAGAGTTTTGACGAAAATTTGCATG 10815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476565034247640