Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq7711 122 8e-23 seq6735 122 8e-23 seq1303 122 8e-23 seq5539 109 5e-19 seq2634 104 2e-17 seq923 89.7 5e-13 >seq7711 Length=15848 Score = 122 bits (134), Expect = 8e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| |||||||| ||| | || || |||| |||||| || Sbjct 10866 CATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTC 10807 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| | ||||| | || |||||||| || ||||| || || || || || ||||| Sbjct 10806 CGACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 10747 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||| |||| || || || ||| | ||||||| | | | || ||| ||||| Sbjct 10746 GCAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAA 10687 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 || ||||| ||||| ||| | || || || ||||| Sbjct 10686 CATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGA 10650 >seq6735 Length=1584 Score = 122 bits (134), Expect = 8e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| |||||||| ||| | || || |||| |||||| || Sbjct 1213 CATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTC 1154 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| | ||||| | || |||||||| || ||||| || || || || || ||||| Sbjct 1153 CGACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 1094 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||| |||| || || || ||| | ||||||| | | | || ||| ||||| Sbjct 1093 GCAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAA 1034 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 || ||||| ||||| ||| | || || || ||||| Sbjct 1033 CATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGA 997 >seq1303 Length=22699 Score = 122 bits (134), Expect = 8e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| |||||||| ||| | || || |||| |||||| || Sbjct 4418 CATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTC 4477 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| | ||||| | || |||||||| || ||||| || || || || || ||||| Sbjct 4478 CGACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 4537 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||| |||| || || || ||| | ||||||| | | | || ||| ||||| Sbjct 4538 GCAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAA 4597 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 || ||||| ||||| ||| | || || || ||||| Sbjct 4598 CATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGA 4634 >seq5539 Length=6842 Score = 109 bits (120), Expect = 5e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | |||||||| || | || || ||| | || || | ||||| ||| | Sbjct 1193 ATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACTCTTGAAGTAGAATCTTCT 1134 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||| |||| ||| | || ||||||||||| ||||| || || || || || |||||| Sbjct 1133 GATTCTATTGAGAATGTTAAACAAAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 1074 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 ||| | | |||| || ||| |||||||| ||||||| | | |||| |||||||| Sbjct 1073 CAACGCTTGATTTTCGCCGGTAAACAACTAGAAGATGGCCGTACCTTGTC--CGATTACA 1016 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | |||||||||||||| || |||| || || Sbjct 1015 ACATTCAAAAAGAATCTACTCTTCACTTGGT 985 >seq2634 Length=12318 Score = 104 bits (114), Expect = 2e-17 Identities = 157/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 136642 GTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTTAAA 136701 ||||||| ||| | || ||||||||||| ||||| || ||||||||||| ||||| || Sbjct 9657 GTGAATTTGATAGCATCGGCGGCAGGTTTGGTTCTGAGGTAGTACATGCCTGTCTTCAAG 9598 Query 136702 CCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCCACG 136761 || |||| |||| |||| || || || | | ||| || | || | | ||| | Sbjct 9597 CCTTTCTTCCAGCCATAAAAGTGCATGGAAGTGAGTTTTTGGTAATTTGGGTTGTCCATG 9538 Query 136762 AAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTCAAT 136821 || ||| || || ||||| ||||| ||||||| ||| ||||| || | | ||||| Sbjct 9537 TGAATATTGAGGGACTGGCTTTGATCAATGTAAGCTCCACGGTCGGCAGATA-AATCAAT 9479 Query 136822 -AGTACTTTTTGCTTAATTTCCCAAGCGGTTTTAAAGAGCT 136861 | | ||||| |||||||| || | ||||| |||||| Sbjct 9478 GATGGCCTTTTGTTTAATTTCATAAACAGTTTTGTAGAGCT 9438 >seq923 Length=21762 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 25170 ACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAG 25229 ||||||||||| | || || ||||| |||| || || | ||||| | ||||||||| Sbjct 10819 ACAACATGCAAATTTTCGTCAAAACTCTAACAGGTAAGACTATCACCCTTGAAGTCGAAT 10760 Query 25230 CCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 | || || || || | || || || ||||| || || || || || || || | Sbjct 10759 CTTCAGACACAATTGACAACGTCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCACCAG 10700 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 | |||||| | ||||||| || || ||||| |||||||| | | | | | || | Sbjct 10699 ACCAGCAACGTCTCATTTTCGCAGGTAAACAGCTCGAAGACGGCCGCACTTTGTCTGACT 10640 Query 25350 ACAATATTCAAAAAGAATCCAC 25371 |||| || |||||||||||||| Sbjct 10639 ACAACATCCAAAAAGAATCCAC 10618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445051287043680