Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5042 163 4e-34 seq7572 89.7 7e-12 >seq5042 Length=7215 Score = 163 bits (180), Expect = 4e-34 Identities = 378/558 (68%), Gaps = 24/558 (4%) Strand=Plus/Minus Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 |||||| |||||||| |||||| | || ||| || ||||||| || || ||||| || Sbjct 6232 ATATGGCAAATGTACAAAAAAG-CTGAAGCCAGTTTCTGGACCGTTGAAGAAGTCGATCT 6174 Query 1455836 CGGCGC-CGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | | |||||| ||||||| ||| | || |||| | |||| |||| Sbjct 6173 -GTCACACGACACTCAACACTGGGAAAATAAGCTAACTGATAACGAAAGATATTTTATCA 6115 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 || || |||||||||| || ||| ||||||||||| ||||| ||| ||||| | || | Sbjct 6114 AGAACATCCTCGCCTTCTT-CGCTGCCAGCGATGGTATCGTCAACGAAAACCTCGTCGCC 6056 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 |||| | || |||||| | || || || || | ||||| || ||||| || Sbjct 6055 AACTTTGGAACTGAAGTCCAAATCCCTGAAGCCCGCTGTTTTTATGGTTTCCAAATTATG 5996 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || |||||||||||| ||||| ||||| | || || || || ||| |||| || Sbjct 5995 ATTGAAAACATCCACAGTGAAATGTACTCCATGCTTATTGATACTTACATCAAAGATAAC 5936 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 || || | ||| ||| | |||| | | | | || | | | ||||||||| Sbjct 5935 GTTGAAAGAGACTTCCTACTCAACGCCGTTCAAAACATCCCCTGCATTAAGAAAAAGGCT 5876 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA----CTTTGCCGAGCGGCTC 1456187 ||||||| | ||||||| || | | ||| ||||| ||| | || Sbjct 5875 AACTGGGCTCTTGAGTGGAT------TGATGACTCTAACAAAAGCTTTGGCGAAAGACT- 5823 Query 1456188 GTCGGC--TTTGCCGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTG 1456245 | | || |||| ||| || |||||||| ||| ||| ||| ||||||||| || Sbjct 5822 GGCTGCTTTTTGTGTCGTTGAAGGCATCTTCTTCAGTGGCTCTTTTGCCGCCATCTTCTG 5763 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCTT-CTGCTTTAGCAACGAATTTATCAGTCGC 1456304 |||||| ||||| |||||||||||||||||| || || ||||||| ||||| || | Sbjct 5762 GCTCAAAAAGCGTGGCCTCATGCCCGGTCTTACT--TTCTCCAACGAACTTATCTGTAGA 5705 Query 1456305 GACGAA-GTTTTCACCCC 1456321 |||||| || ||||| || Sbjct 5704 GACGAAGGTCTTCACACC 5687 >seq7572 Length=6253 Score = 89.7 bits (98), Expect = 7e-12 Identities = 165/236 (70%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 |||||| |||||||| |||||| | || ||| || ||||||| || || ||||| || Sbjct 245 ATATGGCAAATGTACAAAAAAG-CTGAAGCCAGTTTCTGGACCGTTGAAGAAGTCGATCT 187 Query 1455836 CGGCGC-CGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | | |||||| ||||||| ||| | || |||| | |||| |||| Sbjct 186 -GTCACACGACACTCAACACTGGGAAAATAAGCTAACTGATAACGAAAGATATTTTATCA 128 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 || || |||||||||| || ||| ||||||||||| ||||| ||| ||||| | || | Sbjct 127 AGAACATCCTCGCCTTCTT-CGCTGCCAGCGATGGTATCGTCAACGAAAACCTCGTCGCC 69 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 |||| | || |||||| | || || || || | ||||| || ||||| || Sbjct 68 AACTTTGGAACTGAAGTCCAAATCCCTGAAGCCCGCTGTTTTTATGGTTTCCAAAT 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177063794707338