Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq923 174 2e-38 seq7711 143 3e-29 seq6735 143 3e-29 seq1303 143 3e-29 seq5539 131 2e-25 >seq923 Length=21762 Score = 174 bits (192), Expect = 2e-38 Identities = 180/233 (77%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||||||| || | || | ||| || |||||||| ||||| ||||||||||| | | Sbjct 10588 CCGCCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAC 10647 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| | ||| ||||||||||| ||||| ||||| | ||| ||||| || || || Sbjct 10648 AA-AGTGCGGCCGTCTTCGAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGG 10706 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||| ||||| || ||||| ||| | |||||| || ||||| || Sbjct 10707 GATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGAC 10766 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGT 134718 || || || || || ||||| |||| |||||| |||||||||||||| |||| Sbjct 10767 TTCAAGGGTGATAGTCTTACCTGTTAGAGTTTTGACGAAAATTTGCATGTTGT 10819 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || | ||| || |||||||| ||||| ||||||||||| Sbjct 10360 CCACCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAT 10419 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || |||||||| ||||| ||||| | ||| ||||| || || || Sbjct 10420 AAAGTGCGGCCGTCTTCAAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGG 10479 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||||||||| || ||||| ||| | |||||| || ||||| || Sbjct 10480 ATTCCTTCCTTGTCTTGAATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACT 10539 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || | || || |||||||||||||| Sbjct 10540 TCAAGGGTGATAGTCTTACCTGTAAGGGTCTTTACGAAAATTTGCAT 10586 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 134580 AAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACC 134639 ||||| | || ||||| || || || || ||||| || ||||| ||||| || ||||| Sbjct 10225 AAAATGAGGCGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTGACG 10284 Query 134640 GCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTA 134699 ||| | |||||| || ||||| || || || || ||||| ||||| || | |||||| Sbjct 10285 TTGTCAATTGTGTCCGAAGATTCGACTTCAAGGGTGATGGTCTTACCTGTCAGAGTTTTG 10344 Query 134700 ACGAAAATTTGCAT 134713 |||||||||||||| Sbjct 10345 ACGAAAATTTGCAT 10358 >seq7711 Length=15848 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||||| | || | ||| || || ||||||||||| |||||||||||| Sbjct 10639 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 10698 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || | || || ||||| ||||| | | |||||||| || || Sbjct 10699 AGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 10758 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || ||||||||||| || | | |||||| ||||| || Sbjct 10759 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 10818 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| |||||||||||||| ||||| || || || ||||| Sbjct 10819 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 10865 >seq6735 Length=1584 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||||| | || | ||| || || ||||||||||| |||||||||||| Sbjct 986 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 1045 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || | || || ||||| ||||| | | |||||||| || || Sbjct 1046 AGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 1105 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || ||||||||||| || | | |||||| ||||| || Sbjct 1106 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 1165 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| |||||||||||||| ||||| || || || ||||| Sbjct 1166 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 1212 >seq1303 Length=22699 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||||| | || | ||| || || ||||||||||| |||||||||||| Sbjct 4645 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 4586 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || | || || ||||| ||||| | | |||||||| || || Sbjct 4585 AGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 4526 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || ||||||||||| || | | |||||| ||||| || Sbjct 4525 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 4466 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| |||||||||||||| ||||| || || || ||||| Sbjct 4465 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 4419 >seq5539 Length=6842 Score = 131 bits (144), Expect = 2e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||| |||||||||||||| ||| | ||| | || || || || Sbjct 990 GTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTACGGCCATCTTCTAGTTG 1049 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || || |||||||| || |||||||| || || || ||||| || ||||| ||||| Sbjct 1050 TTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTT 1109 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 |||||| || || | | || || ||||| || || ||||| ||||||||||| || Sbjct 1110 TTGTTTAACATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGGTTTTACCTGT 1169 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 | ||| || || ||||| |||||| Sbjct 1170 AAGAGTCTTTACAAAAATCTGCATT 1194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505349445847480