Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5042 289 4e-73 seq2634 188 1e-42 seq7572 100 4e-16 >seq5042 Length=7215 Score = 289 bits (320), Expect = 4e-73 Identities = 611/905 (68%), Gaps = 10/905 (1%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| || |||||||| || | |||||| || || || |||||||||||||||| Sbjct 5372 CATAACACCGGCCTTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTG 5431 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 || || || | ||||||||||| || || ||||| | | ||| | ||| | || || Sbjct 5432 CATAGAGATCATATCCATGAAATCGAATGGGTTAGTGACGTGATAATGTTTGCTGAAACC 5491 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492 || ||| || | || ||||||||||| || || ||| | || | ||| Sbjct 5492 TAGAGACAAAAGTAAACGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTATT 5551 Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552 ||||||||| || || ||||| | || |||| || |||| ||||||| ||||| Sbjct 5552 CATTCCTATTAGGGAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGGC 5611 Query 39553 CTCTGTTATTATCGATGTTACTACCTCATCACTCGG-TGGATGCAATAAATGTTTAAACA 39611 ||| | | || | | || | || ||| || | | || | | | ||| |||| Sbjct 5612 CTCAGCAACGATGGCTAATATTTTTTCTTCAGAGGGCTTGTTG-ATGAGGTATTTGAACA 5670 Query 39612 TTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATG 39671 || |||| | || || || || || || ||||||| || | |||||| || || | Sbjct 5671 ATAGGCAGCCAAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAG 5730 Query 39672 TGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAA 39731 | || || ||||| || ||||||||||||||||| || ||||| |||||||| ||| | Sbjct 5731 TAAGACCGGGCATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGA 5790 Query 39732 AGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA---T 39788 ||||||||||||| || | ||| ||| | ||||| || || | ||| | | | | Sbjct 5791 AGAAGATGCCTTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAAGCTTTTGTTAGAGT 5850 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 || ||||||| | ||||| | ||| || ||||| | || || || ||| | | Sbjct 5851 CATCAATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACGG 5910 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | || | || | | | ||||| | ||||||| | || ||||| || | || | Sbjct 5911 CGTTGAGTAGGAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATAAGCATGGAGT 5970 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 ||||||| ||||||||||||||| || || || || |||||||| | ||||||| Sbjct 5971 ACATTTCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAG 6030 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 ||||| || || | | ||| | | | | ||||| || || || ||||| || | Sbjct 6031 GGATTTGGACTTCAGTTCCAAAGTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGG 6090 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTC---ATCGGGTGTCAATTTAT 40085 | || || || || | | | || ||||||||| |||| ||| | | | || | Sbjct 6091 CAGCGAAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTT 6150 Query 40086 TCCAGTCATTGA-TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 ||||| |||| | || | ||| | ||| ||||||||| | ||||| || || || Sbjct 6151 CCCAGT-GTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCA 6209 Query 40145 GCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTT 40204 || ||||||||||| | |||||| || | ||| |||||| || | || ||||||||| Sbjct 6210 GCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTATTT 6269 Query 40205 GGATT 40209 || || Sbjct 6270 GGGTT 6274 >seq2634 Length=12318 Score = 188 bits (208), Expect = 1e-42 Identities = 559/852 (66%), Gaps = 9/852 (1%) Strand=Plus/Minus Query 69348 TTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAAT 69407 ||| || || || || ||||| || ||| || |||||| ||||| ||||| || || Sbjct 8548 TTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTGCCGTTACAAGCGTCTTTGTAGAGCAT 8489 Query 69408 AAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATT 69467 | ||||| |||||||| || || || || | ||||| | ||| | | ||| | Sbjct 8488 GTATGGAGTTCCAGTTTCGATTTGGGAATCTAAAATAGCGTACCAGAGTTGCTGGGCAGT 8429 Query 69468 TATTACGGT--CTTGTAACGC-TTCTCT-TTTTCATATTGTGTATATAGCCGTTCGAATT 69523 || || | | | || | ||| | ||||| |||| | || || ||||| | Sbjct 8428 GATG-CGTTTGCGAGGAAGACCTTCAGTGTTTTCGTATTTTAGGTAGAGTTCATCGAACT 8370 Query 69524 CATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACAT 69583 || |||||||| ||| | | ||||| ||||| || || | |||||||| || Sbjct 8369 TCTCGCCCCAAACGTCAGCTAGACCAGGGGCTTCATGGGGGCAGAATAATGACCAGTCAC 8310 Query 69584 CATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCT 69642 | | ||| ||| || ||| || || || |||||||||||| | || || || || Sbjct 8309 CGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGGAATCCAAAGACCGTAGAACAAG-TCA 8251 Query 69643 CTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCA 69702 | || | ||||||||| || || ||||||| | || | | ||| || | ||| || Sbjct 8250 CGGGCACGATTTTCTTCTTTACCGTGATTTTTTCTTAGGTTTAAAAATTCAAAAATGTCG 8191 Query 69703 GAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCT 69762 | |||||||||||| || || || || | | | || || ||||| || || || || || Sbjct 8190 GCATGCCATGGTTCAAGGTAAATGGCGAAGGCGCCTGGACGTTTGTTGCCGCCTTGGTCG 8131 Query 69763 ATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCA 69822 | |||||| || || | || | ||| ||||| |||| ||| || || || ||||| Sbjct 8130 ACGTATCTAGCGGTAGTGTTGAATACTTGGAGCATTGGAACAATTCCGTTCGAAGTACCA 8071 Query 69823 TTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCT 69882 || ||||| | || ||| || |||| |||||||| ||| |||||| ||||| Sbjct 8070 TTGGTTCCGGCGATGTAAGAGCCAGTTGCACGAATATTGTGGATACTTAGACCAATTCCA 8011 Query 69883 CCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTA 69942 || || |||||||||| ||| || | | || ||||| ||||| || ||| Sbjct 8010 CCAGCAGATTTAGAGATTTTAGCGCATTGGGAGATAGTATCATAAATACCTTCGATGGAG 7951 Query 69943 TCATCTATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATT 70001 ||||| || ||||| ||| || ||| | | ||| || | ||||||| | || Sbjct 7950 TCATCCTGCATTGTTAGCAAG-AAGCAGGAACTTAGCTGAGGACGATTAGTTCCAGAGTT 7892 Query 70002 AAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061 || | ||||||||| || ||||| || | | || | || | |||||| || Sbjct 7891 GAAAAGTGTAGGAGAGGCATGAGTAAAAAAGCGCTGTGACATGAGGTGGTATGTAGTGAT 7832 Query 70062 AGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121 ||| |||| ||||| ||| || || || ||| ||||| | | | || || Sbjct 7831 AGCGGATTGGATATCATCGCCATGGATACCAATGCTGACGCGCATGAGAAGGTATTGTGG 7772 Query 70122 TCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCC 70181 || ||| | ||||| | | ||||| ||||| || |||| || ||||| || || Sbjct 7771 TCTTTCAATAATTTTACCGTCAACTTTCAGGAGGTAAGACCTTTCGAGGGTTTTGAAGCC 7712 Query 70182 AAAATAGTTGTA 70193 ||| ||||| || Sbjct 7711 AAAGTAGTTATA 7700 >seq7572 Length=6253 Score = 100 bits (110), Expect = 4e-16 Identities = 197/288 (68%), Gaps = 5/288 (2%) Strand=Plus/Plus Query 39926 TTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAA 39985 ||||||||| || || || || |||||||| | ||||||| ||||| || || | Sbjct 1 TTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGACTTCAGTT 60 Query 39986 CAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAAT 40045 | ||| | | | | ||||| || || || ||||| || || || || || || | Sbjct 61 CCAAAGTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGCGAGG 120 Query 40046 ACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT---CCAGTCATTGA-TATC 40101 | | || ||||||||| |||| | || | ||||| ||||| |||| | || Sbjct 121 ATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTG-TTGAGTGTC 179 Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTT 40161 | ||| | ||| ||||||||| | ||||| || || || || ||||||||||| | Sbjct 180 GTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACATTTG 239 Query 40162 CCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 |||||| || | ||| |||||| || | || ||||||||||| || Sbjct 240 CCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTATTTGGGTT 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686842264296360