Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5042 183 2e-41 >seq5042 Length=7215 Score = 183 bits (202), Expect = 2e-41 Identities = 585/892 (66%), Gaps = 29/892 (3%) Strand=Plus/Minus Query 43696 TAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACA 43755 ||| || ||| | || ||||| ||| || || ||||||||||||||||||||||| | Sbjct 6266 TAGATTCGTCCTCTTCCCAATAAAATGGCACGAAATATGGCAAATGTACAAAAAAGCTGA 6207 Query 43756 GGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC--TTAGCACATTGGATT 43813 || || ||||| | |||||||| ||| || | | ||| | | ||| | ||| Sbjct 6206 AGCCAGTTTCTGGACCGTTGAAGAAGTCGATCTGTCACACGACACTCAACAC-TGGGAA- 6149 Query 43814 GCATTAA---AACC-ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTG 43868 | ||| ||| | || |||| | ||||||| | | || || || |||| Sbjct 6148 --AATAAGCTAACTGATAACGAAAGATATTTTATCAAGAACATCCTCGCCTTCTTCGCTG 6091 Query 43869 CGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTAC 43928 | ||||| || || ||||| ||||| | || |||| ||||| ||| | | Sbjct 6090 CCAGCGATGGTATCGTCAACGAAAACCTCGTCGCCAACTTTGGAACTGAAGTCCAAATCC 6031 Query 43929 CAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGT 43988 | ||||| || ||||||||||| || |||||| || ||||| || || ||||||| Sbjct 6030 CTGAAGCCCGCTGTTTTTATGGTTTCCAAATTATGATTGAAAACATCCACAGTGAAATGT 5971 Query 43989 ACAGTCTTCTGATAGATACGTACATCAAAGATGG----GCACGAGAAGCATCGATTGTTT 44044 || | || || ||||| |||||||||||| | | |||| | || | | Sbjct 5970 ACTCCATGCTTATTGATACTTACATCAAAGATAACGTTGAAAGAGA--CTTCC--TACTC 5915 Query 44045 AATGC-GATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT 44103 || || | | ||||| ||||| ||||| | || || ||||||| ||| | ||||| Sbjct 5914 AACGCCGTTCAAAACATCCCCTGC-ATTAAGAAAAAGGCTAACTGGGCTCTTGAGTGGAT 5856 Query 44104 AAAT---TCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCAT 44160 || || || | ||||| ||| |||| | || ||| || || |||||||| Sbjct 5855 TGATGACTCTAACAAAAGCTTTGGCGAAAGACTGGCTGCTTTTTGTGTCGTTGAAGGCAT 5796 Query 44161 TTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGG 44220 ||||| || || ||||| ||||| || ||| | || || || || | ||||| || Sbjct 5795 CTTCTTCAGTGGCTCTTTTGCCGCCATCTTCTGGCTCAAAAAGCGTGGCCTCATGCCCGG 5736 Query 44221 GTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 | || || || || || | || || | || ||||| | || |||||||| || Sbjct 5735 TCTTACTTTCTCCAACGAACTTATCTGTAGAGACGAAGGTCTTCACACCGATTTTGGCTG 5676 Query 44281 CTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTAC-AGATATTG 44339 | | || | ||| || || ||||| || || | | || || || || | Sbjct 5675 CCTATTGTTCAAATACCTCATCAAC---AAGCCCTC-TGAAGAAAAAATATTAGCCATCG 5620 Query 44340 TTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAA 44399 ||| ||||| || | || ||||||||||| | || || ||||||| ||| Sbjct 5619 TTGCTGAGGCCGTTACCATCGAACAAGAATTCTTAACTGACTCACTACCTGTCTCCCTAA 5560 Query 44400 TAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTT 44459 ||||||||||| || ||| ||| ||||| |||| |||| || |||||||||| Sbjct 5559 TAGGAATGAATAGCAAATTAATGTCCCAGTATATCGAATTTGTTGCTGACCGTTTACTTT 5500 Query 44460 TGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATA 44519 || || |||| | ||||| ||| || ||||| || ||||| ||||| | | Sbjct 5499 TGTCTCTAGGTTTCAGCAAACATTATCACGTCACTAACCCATTCGATTTCATGGATATGA 5440 Query 44520 TTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 | || || |||||||||| || || |||||||| |||||| | || || || Sbjct 5439 TCTCTATGCAAGGCAAAACTAATTTCTTTGAAAAGCGCGTTAGCGACTACCA 5388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397418463882745