Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2634 125 9e-24 >seq2634 Length=12318 Score = 125 bits (138), Expect = 9e-24 Identities = 604/950 (64%), Gaps = 34/950 (4%) Strand=Plus/Minus Query 118703 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 118762 |||||| || || || || | || || |||| || ||||| ||||| || | Sbjct 8632 AGGAAGAGCAATAGAGGCTAAGTTGCAAACAGCAACTTCGTCCTTGGAGGTGTATTCAAC 8573 Query 118763 AATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 118822 ||||| ||||| | |||||| || ||||| || || | ||| | ||| || || || Sbjct 8572 GATTTCAGTGCAAAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTGCC 8513 Query 118823 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 118882 |||||| || || ||||| ||||||||||| || || || || ||||||| | | ||| Sbjct 8512 GTTACAAGCGTCTTTGTAGAGCATGTATGGAGTTCCAGTTTCGATTTGGGAATCTAAAAT 8453 Query 118883 AGCCTTCCAGACATCGGCAGCTGGCACAGTG--GCGTTGGC----TCGCCCCTC---TTC 118933 ||| | ||||| | ||||| ||||| ||||| || | || || | Sbjct 8452 AGCGTACCAGA-----GTTGCTGG-GCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGTT 8399 Query 118934 CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC 118993 ||||| ||| |||||| | || |||| || ||| | || | || || || || Sbjct 8398 TTCGTATTTTAGGTAGAGTTCATCGAACTTCTCGCCCCAAACGTCAGCTAGACCAGGGGC 8339 Query 118994 CTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTC 119053 | || |||||||| | ||||| | ||| ||| ||| || |||||| ||||| Sbjct 8338 TTCATGGGGGCAGAATAATGACCAGTCACCGTTTTCCAAAACGCGGCGCATGAAAAGGTC 8279 Query 119054 TGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAG 119113 || ||||| || | |||| | || || ||| |||||| | || ||||| Sbjct 8278 AGGAATCCAAAGACCGTAGAACAAGTCACGGGCACGATTTTCTTCTTTACCGTGATTTTT 8219 Query 119114 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 119173 | | | ||||| || | || || || ||||| ||||| ||||| | |||| | Sbjct 8218 TCTTAGGTTTAAAAATTCAAAAATGTCGGCATGCCATGGTTCAAGGTAAATGGCGA-AGG 8160 Query 119174 CCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACG 119227 | ||| |||| || | |||| || || || || || | ||| ||||| | Sbjct 8159 CGCCT--GGACGTTTGTTGCCGCCTTGGTCGACGTATCTAGCGGTAGTGTTGAATACTTG 8102 Query 119228 AAGCATTGGAATGATACCATCGGATTGGCCATTTG-TCCCCCGA-ATACGAGACTTATTG 119285 |||||||||| || || | || ||||| | ||| ||| || ||| | | | Sbjct 8101 GAGCATTGGAACAATTCCGTTCGAAGTACCATTGGTTCCGGCGATGTAAGAGCC--AGTT 8044 Query 119286 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC 119345 || | | || |||||| | |||||| || || || | || ||||||| ||||| Sbjct 8043 GCACGAATATTGTGGATACTTAGACCAATTCCACCAGCAGATTTAGAGATTTTAGCGCAT 7984 Query 119346 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 119405 | | || | | | || || || ||||| |||||| ||| ||| | || ||| || Sbjct 7983 TGGGAGATAGTATCATAAATACCTTCGATGGAGTCATCCTGCATTG---TTAGCAAGAAG 7927 Query 119406 CTCGACATT---TGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATG 119462 | || || ||||| | || |||| |||||| || || || | || || | Sbjct 7926 CAGGAACTTAGCTGAGGACGATTAGTTCCAGAGTTGAAAAGTGTAGGAGAGGCATGAGTA 7867 Query 119463 AACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGA 119522 || | | || ||||| || ||| || | ||| | || || || || || Sbjct 7866 AAAAAGCGCTGTGACATGAGGTGGTATGTAGTGATAGCGGATTGGATATCATCGCCATGG 7807 Query 119523 ATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGC 119582 ||||| || ||| ||||| | | |||||| ||| |||| || | |||| || | Sbjct 7806 ATACCAATGCTGACGCGCATGAGAAGGTATTGTGGTCTTTCAATAATTTTACCGTCAACT 7747 Query 119583 CTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAATC 119632 || |||||||| | | || | ||| |||| ||||| ||| | |||| Sbjct 7746 TTCAGGAGGTAAGACCTTTCGAGGGTTTTGAAGCCAAAGTAGTTATAATC 7697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618375296820440