Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq923 140 4e-28 seq5539 138 1e-27 seq7711 136 5e-27 seq6735 136 5e-27 seq1303 136 5e-27 seq2634 84.2 2e-11 >seq923 Length=21762 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| ||||| || |||||||| || ||||| || || || Sbjct 10586 ATGCAAATTTTCGTAAAGACCCTTACAGGTAAGACTATCACCCTTGAAGTCGAATCTTCA 10527 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| |||||||| |||||||| ||||| || ||||||||| Sbjct 10526 GACACAATTGACAACGTCAAGCAGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAG 10467 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| || ||||| || || || || | || || || | ||||| || Sbjct 10466 CAACGTCTCATTTTCGCAGGTAAACAGCTTGAAGACGGCCGCACTTTATCTGACTACAAC 10407 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||||||||| || | || | ||||| | ||||| Sbjct 10406 ATCCAAAAAGAATCCACTCTCCACTTGGTTCTACGTCTCAGAGGTGG 10360 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || || || || |||||||| || ||||| || || || Sbjct 10814 ATGCAAATTTTCGTCAAAACTCTAACAGGTAAGACTATCACCCTTGAAGTCGAATCTTCA 10755 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| ||||| || |||||||| ||||| || ||||||||| Sbjct 10754 GACACAATTGACAACGTCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 10695 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| || ||||| || ||||| || | || || | | ||||| || Sbjct 10694 CAACGTCTCATTTTCGCAGGTAAACAGCTCGAAGACGGCCGCACTTTGTCTGACTACAAC 10635 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 ||||||| ||||||||||| || Sbjct 10634 ATCCAAAAAGAATCCACTCTCCA 10612 >seq5539 Length=6842 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||| || ||||| ||||| ||||| || || || || |||||||| || || || Sbjct 1197 TAGAATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACTCTTGAAGTAGAATC 1138 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 |||| |||| ||| | || ||||| || || ||||| |||||||||||||| Sbjct 1137 TTCTGATTCTATTGAGAATGTTAAACAAAAAATCCAAGATAAGGAAGGAATTCCTCCAGA 1078 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| || | ||||| || ||||| ||||| || |||| |||||| | | || || Sbjct 1077 TCAGCAACGCTTGATTTTCGCCGGTAAACAACTAGAAGATGGCCGTACCTTGTCCGATTA 1018 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | ||||| ||||| |||||||| | || | ||||| || ||||| Sbjct 1017 CAACATTCAAAAAGAATCTACTCTTCACTTGGTTCTCCGTCTACGTGGTGG 967 >seq7711 Length=15848 Score = 136 bits (150), Expect = 5e-27 Identities = 186/258 (72%), Gaps = 9/258 (3%) Strand=Plus/Minus Query 27377 TTaaaaaaaTGGCCAGAAATATTACTATA--ATGCAAATCTTTGTCAAGACGCTTACCGG 27434 |||||||||| |||| ||| |||| ||||| ||||||||||| || | ||||| Sbjct 10889 TTAAAAAAAT------AAAT-TTAGTATATCATGCAGATCTTTGTCAAAACCTTAACCGG 10837 Query 27435 CAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAAT 27494 || |||||||| || ||||| || || || ||| | ||| | || || || Sbjct 10836 TAAAACTATTACCCTCGAGGTCGAATCCTCCGACTCCATCGAAAACGTCAAACAAAAGAT 10777 Query 27495 TCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 || || ||||| |||||||||||||| ||||| | || ||||| || ||||||||| | Sbjct 10776 CCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAAGACTTATTTTCGCAGGTAAGCAATT 10717 Query 27555 CGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 || |||| ||| ||||| | ||||| || ||||||||||||| || || || | || Sbjct 10716 GGAAGATGGTCGCACCCTCTCCGACTACAACATCCAAAAGGAATCTACCCTCCACTTGGT 10657 Query 27615 CTTGCGTCTTCGCGGTGG 27632 | | | || || ||||| Sbjct 10656 CCTAAGACTCCGTGGTGG 10639 >seq6735 Length=1584 Score = 136 bits (150), Expect = 5e-27 Identities = 186/258 (72%), Gaps = 9/258 (3%) Strand=Plus/Minus Query 27377 TTaaaaaaaTGGCCAGAAATATTACTATA--ATGCAAATCTTTGTCAAGACGCTTACCGG 27434 |||||||||| |||| ||| |||| ||||| ||||||||||| || | ||||| Sbjct 1236 TTAAAAAAAT------AAAT-TTAGTATATCATGCAGATCTTTGTCAAAACCTTAACCGG 1184 Query 27435 CAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAAT 27494 || |||||||| || ||||| || || || ||| | ||| | || || || Sbjct 1183 TAAAACTATTACCCTCGAGGTCGAATCCTCCGACTCCATCGAAAACGTCAAACAAAAGAT 1124 Query 27495 TCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 || || ||||| |||||||||||||| ||||| | || ||||| || ||||||||| | Sbjct 1123 CCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAAGACTTATTTTCGCAGGTAAGCAATT 1064 Query 27555 CGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 || |||| ||| ||||| | ||||| || ||||||||||||| || || || | || Sbjct 1063 GGAAGATGGTCGCACCCTCTCCGACTACAACATCCAAAAGGAATCTACCCTCCACTTGGT 1004 Query 27615 CTTGCGTCTTCGCGGTGG 27632 | | | || || ||||| Sbjct 1003 CCTAAGACTCCGTGGTGG 986 >seq1303 Length=22699 Score = 136 bits (150), Expect = 5e-27 Identities = 186/258 (72%), Gaps = 9/258 (3%) Strand=Plus/Plus Query 27377 TTaaaaaaaTGGCCAGAAATATTACTATA--ATGCAAATCTTTGTCAAGACGCTTACCGG 27434 |||||||||| |||| ||| |||| ||||| ||||||||||| || | ||||| Sbjct 4395 TTAAAAAAAT------AAAT-TTAGTATATCATGCAGATCTTTGTCAAAACCTTAACCGG 4447 Query 27435 CAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAAT 27494 || |||||||| || ||||| || || || ||| | ||| | || || || Sbjct 4448 TAAAACTATTACCCTCGAGGTCGAATCCTCCGACTCCATCGAAAACGTCAAACAAAAGAT 4507 Query 27495 TCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 || || ||||| |||||||||||||| ||||| | || ||||| || ||||||||| | Sbjct 4508 CCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAAGACTTATTTTCGCAGGTAAGCAATT 4567 Query 27555 CGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 || |||| ||| ||||| | ||||| || ||||||||||||| || || || | || Sbjct 4568 GGAAGATGGTCGCACCCTCTCCGACTACAACATCCAAAAGGAATCTACCCTCCACTTGGT 4627 Query 27615 CTTGCGTCTTCGCGGTGG 27632 | | | || || ||||| Sbjct 4628 CCTAAGACTCCGTGGTGG 4645 >seq2634 Length=12318 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 80044 AGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAG- 80102 || ||||||||||| ||||| | ||| ||||||||||| || | |||||| ||| |||| Sbjct 9621 AGGTAGTACATGCCTGTCTTCAAGCCTTTCTTCCAGCCATAAAAGTGCATGGAAGTGAGT 9562 Query 80103 CTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGC 80162 || | | | | ||||| |||||| || || || ||||| ||| ||| |||| Sbjct 9561 TTTTGGTAAT-TTGGGTTGTCCATGTGAATATTGAGGGACTGGCTTTGATCAATGTAAGC 9503 Query 80163 CCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTC 80207 ||||| || || | | ||||| || | ||||||| |||||| Sbjct 9502 TCCACGGTCGGCAGATAAATCAATGATGGCCTTTTGTTTAATTTC 9458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570255158308880