Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5539 104 1e-17 seq7711 100 2e-16 seq6735 100 2e-16 seq1303 100 2e-16 >seq5539 Length=6842 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| || ||||||||||| ||||| || | || || Sbjct 976 AGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTACGG 1035 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||||||||| || || || || || || || || || | ||| ||| Sbjct 1036 CCATCTTCTAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCC 1095 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||||| |||||| | ||| | || || ||||| | || Sbjct 1096 TTATCTTGGATTTTTTG-TTTAACATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGT 1154 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| |||||||| || | || || |||||||||||||| Sbjct 1155 TATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 1193 >seq7711 Length=15848 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| || |||||||| ||||| || || || || || || | ||||| Sbjct 10657 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCC 10716 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| ||||| || || || | | || || || || || | ||| ||||| ||| | Sbjct 10717 AATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 10776 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 ||||||||||| | | || | ||| | || || || | ||| || |||||| Sbjct 10777 ATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTA 10836 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||||| ||||| ||||| ||||||||| Sbjct 10837 CCGGTTAAGGTTTTGACAAAGATCTGCATG 10866 >seq6735 Length=1584 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| || |||||||| ||||| || || || || || || | ||||| Sbjct 1004 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCC 1063 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| ||||| || || || | | || || || || || | ||| ||||| ||| | Sbjct 1064 AATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 1123 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 ||||||||||| | | || | ||| | || || || | ||| || |||||| Sbjct 1124 ATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTA 1183 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||||| ||||| ||||| ||||||||| Sbjct 1184 CCGGTTAAGGTTTTGACAAAGATCTGCATG 1213 >seq1303 Length=22699 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| || |||||||| ||||| || || || || || || | ||||| Sbjct 4627 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCC 4568 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| ||||| || || || | | || || || || || | ||| ||||| ||| | Sbjct 4567 AATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 4508 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 ||||||||||| | | || | ||| | || || || | ||| || |||||| Sbjct 4507 ATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTA 4448 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||||| ||||| ||||| ||||||||| Sbjct 4447 CCGGTTAAGGTTTTGACAAAGATCTGCATG 4418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314699876641517