Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7711 190 5e-43 seq6735 190 5e-43 seq1303 190 5e-43 seq5539 159 8e-34 seq923 147 5e-30 >seq7711 Length=15848 Score = 190 bits (210), Expect = 5e-43 Identities = 193/251 (77%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||||||||| | ||| || || || || ||||||||||| || || | ||||| Sbjct 10644 ACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGT 10703 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||||| |||||||| ||||| | ||| || || ||||||| ||| Sbjct 10704 GCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCC 10763 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || |||||||||||||| ||||||||||||| ||| ||| ||| |||||||| Sbjct 10764 TTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAG 10823 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTTACTTGATGC 211132 || || || || || || | || || ||||| | |||||| ||| | | || | Sbjct 10824 GGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATGATATACTAAATTTA--- 10880 Query 211133 TTCTTTTAAAA 211143 || |||||||| Sbjct 10881 TTTTTTTAAAA 10891 >seq6735 Length=1584 Score = 190 bits (210), Expect = 5e-43 Identities = 193/251 (77%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||||||||| | ||| || || || || ||||||||||| || || | ||||| Sbjct 991 ACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGT 1050 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||||| |||||||| ||||| | ||| || || ||||||| ||| Sbjct 1051 GCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCC 1110 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || |||||||||||||| ||||||||||||| ||| ||| ||| |||||||| Sbjct 1111 TTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAG 1170 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTTACTTGATGC 211132 || || || || || || | || || ||||| | |||||| ||| | | || | Sbjct 1171 GGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATGATATACTAAATTTA--- 1227 Query 211133 TTCTTTTAAAA 211143 || |||||||| Sbjct 1228 TTTTTTTAAAA 1238 >seq1303 Length=22699 Score = 190 bits (210), Expect = 5e-43 Identities = 193/251 (77%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||||||||| | ||| || || || || ||||||||||| || || | ||||| Sbjct 4640 ACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGT 4581 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||||| |||||||| ||||| | ||| || || ||||||| ||| Sbjct 4580 GCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCC 4521 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || |||||||||||||| ||||||||||||| ||| ||| ||| |||||||| Sbjct 4520 TTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAG 4461 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTTACTTGATGC 211132 || || || || || || | || || ||||| | |||||| ||| | | || | Sbjct 4460 GGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATGATATACTAAATTTA--- 4404 Query 211133 TTCTTTTAAAA 211143 || |||||||| Sbjct 4403 TTTTTTTAAAA 4393 >seq5539 Length=6842 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || |||||||| ||||| ||||| | | ||| | |||||| Sbjct 982 AGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTACGGCCATCT 1041 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || ||||| || | |||||| || || ||||||| ||||||||| || Sbjct 1042 TCTAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCT 1101 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| |||||||| || || || || | ||||| ||| || || ||||| || || Sbjct 1102 TGGATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGGTT 1161 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 || || || |||||||||||||| | ||||||| || Sbjct 1162 TTACCTGTAAGAGTCTTTACAAAAATCTGCATTCTA 1197 >seq923 Length=21762 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || | ||| |||||||| |||||||||||||| || || | | || | || || Sbjct 10602 TAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCGTC 10661 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||| ||||| || |||||||| || || ||||| ||||| || || | |||||||||||| Sbjct 10662 TTCGAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTC 10721 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||| || || || ||||| || || ||||| || ||| || || || ||||| || Sbjct 10722 TTGGATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGT 10781 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 ||| || || ||||| || || || | ||||| || || Sbjct 10782 CTTACCTGTTAGAGTTTTGACGAAAATTTGCATGTTGTG 10820 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || | ||| |||||||| |||||||||||||| || || | | || | || || Sbjct 10374 TAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAAGTGCGGCCGTC 10433 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||| ||||| || |||||||| || || ||||| ||||| || || | |||||||||||| Sbjct 10434 TTCAAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTC 10493 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 || || || || || ||||| || || ||||| || ||| || || || ||||| || Sbjct 10494 TTGAATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGT 10553 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || |||||||| || | ||||| Sbjct 10554 CTTACCTGTAAGGGTCTTTACGAAAATTTGCAT 10586 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 210981 AAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACG 211040 || || |||||||| ||||| || || | |||||||||||| ||||| || || || ||| Sbjct 10225 AAAATGAGGCGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTGACG 10284 Query 211041 TTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTT 211100 || || || ||||| || ||| || || || ||||| ||||| || || ||||| || Sbjct 10285 TTGTCAATTGTGTCCGAAGATTCGACTTCAAGGGTGATGGTCTTACCTGTCAGAGTTTTG 10344 Query 211101 ACAAACACCTGCAT 211114 || || | ||||| Sbjct 10345 ACGAAAATTTGCAT 10358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159036914680385