Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq923 84.2 2e-11 >seq923 Length=21762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 170/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || ||||| | |||| ||||| || || ||| ||||||| Sbjct 10345 ACGAAAATTTG--CATACCACCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTT 10402 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || || || | | || || |||| ||||||||||| || || || || |||| Sbjct 10403 GGATGTTGTAGTCAGATAAAGTGCGGCCGTCTTCAAGCTGTTTACCTGCGAAAATGAGAC 10462 Query 39161 GCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCAC 39218 | |||||||| |||||| | | || ||||| |||||||| |||| ||| | | | Sbjct 10463 GTTGCTGGTCTGGTGGG-ATTCCTTCCTTGTCTTGAATTTTCTGCTTGA-CGTTGTCAAT 10520 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 || || || || || || | |||||| | || || || || || || || || || Sbjct 10521 TGTGTCTGAAGATTCGACTTCAAGGGTGATAGTCTTACCTGTAAGGGTCTTTACGAAAAT 10580 Query 39279 TTGCAT 39284 |||||| Sbjct 10581 TTGCAT 10586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429505033310837