Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq923 163 7e-35 seq7711 149 1e-30 seq6735 149 1e-30 seq1303 149 1e-30 seq5539 123 6e-23 >seq923 Length=21762 Score = 163 bits (180), Expect = 7e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||||||||||||||||||||||| ||||| || | |||||| | || ||| Sbjct 10603 AGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCGTCT 10662 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || ||||| || || ||||| ||||| || || || |||||||||||| Sbjct 10663 TCGAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 10722 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||| || || || |||||||| | ||| || || | ||||| ||| Sbjct 10723 TGGATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTC 10782 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 || || || | |||||| | ||| | |||||| || || Sbjct 10783 TTACCTGTTAGAGTTTTGACGAAAATTTGCATGTTGTG 10820 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||||||||||||||||||||||| ||||| || | ||||| | || ||| Sbjct 10375 AGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAAGTGCGGCCGTCT 10434 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || ||||| || || ||||| ||||| || || || |||||||||||| Sbjct 10435 TCAAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 10494 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||||| || || || |||||||| | ||| || || | ||||| ||| Sbjct 10495 TGAATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTC 10554 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || |||| ||| | |||||| Sbjct 10555 TTACCTGTAAGGGTCTTTACGAAAATTTGCAT 10586 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 225580 AAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACA 225639 || || || ||||| ||||| || || || ||||||||||||||||| || ||||| || Sbjct 10225 AAAATGAGGCGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTGACG 10284 Query 225640 GCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTT 225699 || || ||||| || | ||| || || | ||||| ||||| || |||| |||||| Sbjct 10285 TTGTCAATTGTGTCCGAAGATTCGACTTCAAGGGTGATGGTCTTACCTGTCAGAGTTTTG 10344 Query 225700 ATGAACACTTGCAT 225713 | ||| | |||||| Sbjct 10345 ACGAAAATTTGCAT 10358 >seq7711 Length=15848 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||| ||||| | |||||| || ||||| ||||||| ||||| |||| | || Sbjct 10644 ACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGT 10703 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| || ||||| ||||||| ||| || || || ||||| || Sbjct 10704 GCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCC 10763 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| |||||||||||||| || || |||||||| ||| |||| ||| || || | Sbjct 10764 TTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAG 10823 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || || || || || || ||||| Sbjct 10824 GGTAATAGTTTTACCGGTTAAGGTTTT 10850 >seq6735 Length=1584 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||| ||||| | |||||| || ||||| ||||||| ||||| |||| | || Sbjct 991 ACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGT 1050 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| || ||||| ||||||| ||| || || || ||||| || Sbjct 1051 GCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCC 1110 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| |||||||||||||| || || |||||||| ||| |||| ||| || || | Sbjct 1111 TTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAG 1170 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || || || || || || ||||| Sbjct 1171 GGTAATAGTTTTACCGGTTAAGGTTTT 1197 >seq1303 Length=22699 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||| ||||| | |||||| || ||||| ||||||| ||||| |||| | || Sbjct 4640 ACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGT 4581 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| || ||||| ||||||| ||| || || || ||||| || Sbjct 4580 GCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCC 4521 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| |||||||||||||| || || |||||||| ||| |||| ||| || || | Sbjct 4520 TTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAG 4461 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || || || || || || ||||| Sbjct 4460 GGTAATAGTTTTACCGGTTAAGGTTTT 4434 >seq5539 Length=6842 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| ||||||||||| | |||||||||| ||| || | |||||| Sbjct 982 AGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTACGGCCATCT 1041 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||| || || || ||||| || | ||||| || || || ||||| |||||||| ||| Sbjct 1042 TCTAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCT 1101 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| ||||| || ||| || || | || || | ||| || || | || || || Sbjct 1102 TGGATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGGTT 1161 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 || || || | ||| |||| || | |||||| || Sbjct 1162 TTACCTGTAAGAGTCTTTACAAAAATCTGCATTCTA 1197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192412800657806