Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq5042 295 6e-75 >seq5042 Length=7215 Score = 295 bits (326), Expect = 6e-75 Identities = 620/916 (68%), Gaps = 19/916 (2%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 |||||||| ||| || |||||||| ||||||||||||||||||| | || || | Sbjct 5385 TTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTGCATAGAGATCATA 5444 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTT-TTCACACTTTAGAGCTACAAG 4375 ||||| ||||| || || ||||| ||| |||||||| | | || ||||| | ||| Sbjct 5445 TCCATGAAATCGAATGGGTTAGTGACGTGATAATGTTTGCTGAAAC-CTAGAGACAAAAG 5503 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 || |||||||| |||||||| ||||||||| ||| | || || || ||||| |||| Sbjct 5504 TAAACGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTATTCATTCCTATTAG 5563 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 |||||||| | || || || || |||||||| || || ||||| || | | || Sbjct 5564 GGAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGGCCTCAGCAACGAT 5623 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 || |||||| |||| ||| || || || | | |||| ||||||| || |||| Sbjct 5624 GGCTAATATTTTTTCTTCAGAGGGCTTGTTGATGAGGTATTTGAACAATAGGCAGCCAAA 5683 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 ||| || | |||||||||||| | || |||||||| || || || | |||||||| Sbjct 5684 ATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAGTAAGACCGGGCAT 5743 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 | || | |||||| ||||| || || |||||||| || ||| ||||| |||||||| Sbjct 5744 GAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGAAGAAGATGCCTTC 5803 Query 4676 TACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT---GTCTTTAATCCA 4732 ||| | ||| || | | || || | |||| || ||| | |||||| Sbjct 5804 AACGACACAAAAAGCAGCCAGTCTTTCGCCAA---AGCTTTTGTTAGAGTCATCAATCCA 5860 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 | | ||||||||||| |||||||||| ||| || || | | | ||||| | || Sbjct 5861 CTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACGGCGTTGAGTAG 5920 Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 | |||||| |||| || ||||| || || || | | ||||||||| Sbjct 5921 GAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATAAGCATGGAGTACATTTCACT 5980 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAAC 4912 || || ||||| || ||| || || || ||||| || | ||||| | | ||| || Sbjct 5981 GTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGAC 6040 Query 4913 TTC-GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 ||| ||| |||| | | | || | ||||||||| || ||||| || ||||| || || | Sbjct 6041 TTCAGTTCCAAAGT-TGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGA 6099 Query 4972 ACGCCAAAACATGAGATATAAAGTACTGTTCG---TCAG---GCTTAAGTTTTTTCCAGT 5025 | || | | | ||||| || |||| |||| ||||| |||| ||||| Sbjct 6100 AGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTA---TTTTCCCAGT 6156 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTT 5085 | | || | | | ||| ||||||||||| ||||| || ||||| ||||||| Sbjct 6157 GTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTT 6216 Query 5086 TGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAG 5145 ||||||| ||| || || | | | || || | | ||| ||||| || ||| | Sbjct 6217 TGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTATTTGGGTTGG 6276 Query 5146 GTGTAAGAAGCGGTTC 5161 || |||| || || || Sbjct 6277 GTTTAAGTAGAGGCTC 6292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427009269035417