Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5042 271 1e-67 seq2634 168 9e-37 seq7572 107 3e-18 >seq5042 Length=7215 Score = 271 bits (300), Expect = 1e-67 Identities = 610/909 (67%), Gaps = 18/909 (2%) Strand=Plus/Plus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 |||||| || ||||| || || | || || || || || |||||||||||||||| Sbjct 5372 CATAACACCGGCCTTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTG 5431 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCC 47956 || || || | ||||| ||||| ||||| ||| | | |||| ||| | || || Sbjct 5432 CATAGAGATCATATCCATGAAATCGAATGGGTTAGTGACGTGATAATGTTTGCTGAAACC 5491 Query 47957 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATT 48016 || ||| | | || ||||| ||||| ||||| ||| | || | ||| Sbjct 5492 TAGAGACAAAAGTAAACGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTATT 5551 Query 48017 CATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGC 48076 ||||||||| || || ||||| | || || | || ||||||||||| || || || Sbjct 5552 CATTCCTATTAGGGAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGGC 5611 Query 48077 ATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACAT 48136 || | | || | | || |||| ||| || | | | | ||| |||| Sbjct 5612 CTCAGCAACGATGGCTAATATTTTTTCTTCAGAGGGCTTGTTGATGAGGTATTTGAACAA 5671 Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 || || ||||||| ||||||||||| ||||||| || | |||||| || || || Sbjct 5672 TAGGCAGCCAAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAGT 5731 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA 48256 ||||||||||| || ||||| ||||||||||| || || || || ||||| ||| || Sbjct 5732 AAGACCGGGCATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGAA 5791 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT-GT 48315 ||| |||||||| ||| | ||| || | ||||| || || | || || ||| | Sbjct 5792 GAAGATGCCTTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAAGCT---TTTGTTAGA 5848 Query 48316 GT-----ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 || |||||| | ||||| | |||||| ||||| | || || || ||| | Sbjct 5849 GTCATCAATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAAC 5908 Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430 || || | || |||| | ||||| | ||||||| | ||||||||| || | | Sbjct 5909 GGCGTTGAGTAGGAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATAAGCATGGA 5968 Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 |||||||| ||| || |||||||| || || || || |||||||| | ||||| Sbjct 5969 GTACATTTCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTC 6028 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTT--CAGCCAAATTCTCATTTACTATTCCATCA 48548 | ||| || || || || | ||| ||| | | | || || || || || ||||| Sbjct 6029 AGGGATTTGGACTTCAGTTCCAAA--GTTGGCGACGAGGTTTTCGTTGACGATACCATCG 6086 Query 48549 CTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA 48608 || ||||| || || || | | | || ||||||||| ||||||| ||| || ||| Sbjct 6087 CTGGCAGCGAAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTA 6146 Query 48609 TT---CCAGTCATTGA-TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGC 48664 || ||||| |||| | || | ||| | ||| ||||||||| | ||||| || || Sbjct 6147 TTTTCCCAGT-GTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGC 6205 Query 48665 CTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724 || |||||||| ||||| | |||||| || ||| |||||||| | || ||||| Sbjct 6206 TTCAGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCT 6265 Query 48725 ATTTGGATT 48733 |||||| || Sbjct 6266 ATTTGGGTT 6274 >seq2634 Length=12318 Score = 168 bits (186), Expect = 9e-37 Identities = 445/672 (66%), Gaps = 8/672 (1%) Strand=Plus/Minus Query 77934 TCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCA 77993 || |||||||| ||| | | |||||| ||||| ||||| | |||||||||||||| Sbjct 8367 TCGCCCCAAACGTCAGCTAGACCAGGGGCTTCATGGGGGCAGAATAATGACCAGTCACCG 8308 Query 77994 TCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 78053 | |||| ||| || ||| || || ||||| ||||| ||| | || | || ||| Sbjct 8307 TTTTCCAAAACGCGGCGCATGAAAAGGTCAGGAATCCAAAGACCGTAGAACAAGTCACGG 8248 Query 78054 GTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAA 78113 | | || |||||| || || ||| ||| | || | | ||| || | ||| || | | Sbjct 8247 GCACGATTTTCTTCTTTACCGTGATTTTTTCTTAGGTTTAAAAATTCAAAAATGTCGGCA 8188 Query 78114 TGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATA 78173 ||||||||||| || || || || | | || || ||||| || || || || || | Sbjct 8187 TGCCATGGTTCAAGGTAAATGGCGAAGGCGCCTGGACGTTTGTTGCCGCCTTGGTCGACG 8128 Query 78174 TATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTT 78233 ||||| ||||| | || | ||| | |||||||| ||| ||||| || || ||||| Sbjct 8127 TATCTAGCGGTAGTGTTGAATACTTGGAGCATTGGAACAATTCCGTTCGAAGTACCATTG 8068 Query 78234 GTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCT 78293 ||||| | || ||| ||| |||| |||||||| || || || ||||| || Sbjct 8067 GTTCCGGCGATGTAAGAGCCAGTTGCACGAATATTGTGGATACTTAGACCAATTCCACCA 8008 Query 78294 GCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCA 78353 || ||||| ||| |||||| | | ||||| || ||||| || || |||| Sbjct 8007 GCAGATTTAGAGATTTTAGCGCATTGGGAGATAGTATCATAAATACCTTCGATGGAGTCA 7948 Query 78354 TCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAA 78412 ||| || ||||| ||| || ||| | | ||| || || |||||| | || || Sbjct 7947 TCCTGCATTGTTAGCAAG-AAGCAGGAACTTAGCTGAGGACGATTAGTTCCAGAGTTGAA 7889 Query 78413 TAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGC 78472 | ||| ||||| ||||| ||||| | | || | || | |||||| ||||| Sbjct 7888 AAGTGTAGGAGAGGCATGAGTAAAAAAGCGCTGTGACATGAGGTGGTATGTAGTGATAGC 7829 Query 78473 TGATTCTATGTCCCATTG--ATGAATTCCTACCGCT-ACACGCATCAACATATGCTGAGG 78529 |||| || | ||| | ||| || || | ||| || ||||| | | | || || Sbjct 7828 GGATTGGATAT--CATCGCCATGGATACC-AATGCTGACGCGCATGAGAAGGTATTGTGG 7772 Query 78530 TCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACC 78589 |||||||| | ||| | | ||||| | ||| || |||| | ||||| || || Sbjct 7771 TCTTTCAATAATTTTACCGTCAACTTTCAGGAGGTAAGACCTTTCGAGGGTTTTGAAGCC 7712 Query 78590 AAAATAGTTGTA 78601 ||| ||||| || Sbjct 7711 AAAGTAGTTATA 7700 >seq7572 Length=6253 Score = 107 bits (118), Expect = 3e-18 Identities = 201/290 (69%), Gaps = 9/290 (3%) Strand=Plus/Plus Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 |||||||| || || || || |||||||| | ||||| | ||| || || || || Sbjct 1 TTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGACTTCAGTT 60 Query 48510 CAAAATCGTT--CAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTA 48567 | ||| ||| | | | || || || || || ||||| || ||||| || || || | Sbjct 61 CCAAA--GTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGCGA 118 Query 48568 ATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT---CCAGTCATTGA-TA 48623 | | || ||||||||| ||||||| ||| || ||||| ||||| |||| | Sbjct 119 GGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTG-TTGAGTG 177 Query 48624 TCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATA 48683 || | ||| | ||| ||||||||| | ||||| || || || |||||||| ||||| Sbjct 178 TCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACATT 237 Query 48684 TTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATT 48733 | |||||| || ||| |||||||| | || ||||||||||| || Sbjct 238 TGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTATTTGGGTT 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694601512643360