Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5042 279 7e-70 seq2634 163 4e-35 seq7572 100 4e-16 >seq5042 Length=7215 Score = 279 bits (308), Expect = 7e-70 Identities = 623/925 (67%), Gaps = 14/925 (2%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||| || |||||||| || | || || || || || |||||||||||||||| Sbjct 5372 CATAACACCGGCCTTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTG 5431 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 || || || | ||||| ||||| || || ||||| || | |||| ||| | || || Sbjct 5432 CATAGAGATCATATCCATGAAATCGAATGGGTTAGTGACGTGATAATGTTTGCTGAAACC 5491 Query 46446 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT 46505 || ||| | | || ||||| ||||| |||||| ||| | || | ||| Sbjct 5492 TAGAGACAAAAGTAAACGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTATT 5551 Query 46506 CATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGC 46565 ||||||||| || ||| ||||| | || || | || |||||||| || || || || Sbjct 5552 CATTCCTATTAGGGAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGGC 5611 Query 46566 ATCCGATATTATCGATGTTACTGTTTCCTCACTTGG-TGGATGCATCAAATGTTTAAACA 46624 || | | || | | || | |||| ||| || | | || || | | ||| |||| Sbjct 5612 CTCAGCAACGATGGCTAATATTTTTTCTTCAGAGGGCTTGTTG-ATGAGGTATTTGAACA 5670 Query 46625 TTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATG 46684 || || ||||||| ||||| ||||| ||||||| || | |||||| || || | Sbjct 5671 ATAGGCAGCCAAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAG 5730 Query 46685 TGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAA 46744 | || || ||||| || ||||||||||||||||| || || || || ||||| ||| | Sbjct 5731 TAAGACCGGGCATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGA 5790 Query 46745 AGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC---TGGCATCAT 46801 |||| |||||||| || | || || | ||||| || || | | || | | Sbjct 5791 AGAAGATGCCTTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAAGCTTTTGTTAGAGT 5850 Query 46802 TATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAG 46861 || ||||||| ||||||| | |||||||||||| | || || || ||| | | Sbjct 5851 CATCAATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACGG 5910 Query 46862 CATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTAT 46921 | || | || |||| | ||||| | ||||||| | || ||||| || | | | Sbjct 5911 CGTTGAGTAGGAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATAAGCATGGAGT 5970 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981 ||||||| || ||||||||||| || || || || |||||||| | ||||||| Sbjct 5971 ACATTTCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAG 6030 Query 46982 TAATCTGTACCTCTGTACAAAATCGTT-CAGAC-AAATTCTCATTCACTATTCCATCACT 47039 || || || || || | ||| ||| ||| | || || || || || ||||| || Sbjct 6031 GGATTTGGACTTCAGTTCCAAA--GTTGGCGACGAGGTTTTCGTTGACGATACCATCGCT 6088 Query 47040 AGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATT 47099 ||||| || || || | | | || ||||||||| |||| | ||| || ||||| Sbjct 6089 GGCAGCGAAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATT 6148 Query 47100 ---CCAGTCATTGA-TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCT 47155 ||||| |||| | || | ||| | ||| ||||||||| | |||||||| || | Sbjct 6149 TTCCCAGT-GTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTT 6207 Query 47156 CTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTAT 47215 | |||||||| ||||| | |||||| || | ||| || || || | || ||||||| Sbjct 6208 CAGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTAT 6267 Query 47216 TTGGATTTTTTGCAAGTATAGGTTC 47240 |||| || | ||||| ||| || Sbjct 6268 TTGGGTTGGGTTTAAGTAGAGGCTC 6292 >seq2634 Length=12318 Score = 163 bits (180), Expect = 4e-35 Identities = 506/772 (66%), Gaps = 17/772 (2%) Strand=Plus/Minus Query 76270 AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TAGCATTGGCATATTGTATT 76327 |||||| ||||| |||| || ||||| || || || | | | | || |||| | Sbjct 8629 AAGAGCAATAGAGGCTAAGTTGCAAACAGCAACTTCGTCCTTGGA--GGTGTATTCAACG 8572 Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 || || ||||| || || | || || ||||| || ||||||||||| || | Sbjct 8571 ATTTCAGTGCAAAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTGCCG 8512 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATA 76447 ||||| | ||| || || || | | |||||||||||||| || || || || | |||| Sbjct 8511 TTACAAGCGTCTTTGTAGAGCATGTATGGAGTTCCAGTTTCGATTTGGGAATCTAAAATA 8452 Query 76448 GATTTCCAGACGACTCTAG-CTTTTATTA--TAGATTTGTATCGCTTCTCTCTTT-CATA 76503 | | ||||| | || | | | || | | | | |||| | ||| | || Sbjct 8451 GCGTACCAGA-GTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGTTTTCGTA 8393 Query 76504 TTGTGTATATAACCGTTCA---AATTCATCTCCCCAAACATCATCCAAACCAGGACATTC 76560 || | || | ||||| || | || |||||||| ||| | | |||||| ||| Sbjct 8392 TTTTAGGTAGA---GTTCATCGAACTTCTCGCCCCAAACGTCAGCTAGACCAGGGGCTTC 8336 Query 76561 ATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGG 76620 || || || | |||||||| ||||| | |||| ||| || ||| || || ||||| Sbjct 8335 ATGGGGGCAGAATAATGACCAGTCACCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGG 8276 Query 76621 TATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTT 76680 ||||| ||| | || | || |||| | | |||||| || || ||| ||| | Sbjct 8275 AATCCAAAGACCGTAGAACAAGTCACGGGCACGATTTTCTTCTTTACCGTGATTTTTTCT 8216 Query 76681 AAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACC 76740 || | || || || | ||| || | |||||||||||| || || || || | | || Sbjct 8215 TAGGTTTAAAAATTCAAAAATGTCGGCATGCCATGGTTCAAGGTAAATGGCGAAGGCGCC 8156 Query 76741 CGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACAT 76800 || ||||| || || || || || | ||||| || || | || | ||| | ||| Sbjct 8155 TGGACGTTTGTTGCCGCCTTGGTCGACGTATCTAGCGGTAGTGTTGAATACTTGGAGCAT 8096 Query 76801 TGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAAT 76860 ||||| ||| ||||| || |||||||| ||||| | || ||| ||| ||||||||| Sbjct 8095 TGGAACAATTCCGTTCGAAGTACCATTGGTTCCGGCGATGTAAGAGCCAGTTGCACGAAT 8036 Query 76861 ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAA 76920 ||| ||| ||| || ||||| || || |||||||||| ||| || | | Sbjct 8035 ATTGTGGATACTTAGACCAATTCCACCAGCAGATTTAGAGATTTTAGCGCATTGGGAGAT 7976 Query 76921 TGTGTCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGAAGAAAACAGCTAGACA 76979 || ||||| || || || || |||||| || ||||| ||| || ||| | | Sbjct 7975 AGTATCATAAATACCTTCGATGGAGTCATCCTGCATTGTTAGCAAG-AAGCAGGAACTTA 7917 Query 76980 TTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAA 77031 ||| || || |||||| | || || | ||||||||| |||||||| || Sbjct 7916 GCTGAGGACGATTAGTTCCAGAGTTGAAAAGTGTAGGAGAGGCATGAGTAAA 7865 >seq7572 Length=6253 Score = 100 bits (110), Expect = 4e-16 Identities = 211/308 (69%), Gaps = 9/308 (3%) Strand=Plus/Plus Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998 |||||||| || || || || |||||||| | ||||||| || || || || || Sbjct 1 TTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGACTTCAGTT 60 Query 46999 CAAAATCGTTCA-GACAAA-TTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCA 47056 | ||| ||| ||| | || || || || || ||||| || ||||| || || || | Sbjct 61 CCAAA--GTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGCGA 118 Query 47057 ATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATT---CCAGTCATTGA-TA 47112 | | || ||||||||| |||| | ||| || ||||| ||||| |||| | Sbjct 119 GGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTG-TTGAGTG 177 Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172 || | ||| | ||| ||||||||| | |||||||| || || |||||||| ||||| Sbjct 178 TCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACATT 237 Query 47173 TTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGT 47232 | |||||| || | ||| || || || | || ||||||||||| || | |||| Sbjct 238 TGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTATTTGGGTTGGGTTTAAGT 297 Query 47233 ATAGGTTC 47240 | ||| || Sbjct 298 AGAGGCTC 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712865343391680