Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq5042 150 2e-31 seq7572 105 7e-18 >seq5042 Length=7215 Score = 150 bits (166), Expect = 2e-31 Identities = 400/608 (66%), Gaps = 5/608 (1%) Strand=Plus/Plus Query 23494 TACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCA 23553 || || ||||||| || ||||||| || || ||||| || |||| || | ||| Sbjct 5661 TATTTGAACAATAGGCAGCCAAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCG 5720 Query 23554 TTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAAT 23613 || || || || | || ||||| | || || ||||| | ||| || || || ||||| Sbjct 5721 TTGGAGAAAGTAAGACCGGGCATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAA 5780 Query 23614 GATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTT 23673 || || ||||| || || ||||| | ||| || | || | | ||||| || Sbjct 5781 GAGCCACTGAAGAAGATGCCTTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAAGCTT 5840 Query 23674 GCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATT 23733 ||| | ||| |||||| | | ||| |||||||| || | || || Sbjct 5841 TTGTTAGAGTCATCAATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATG 5900 Query 23734 GTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATT 23793 ||| || || || | || || | |||| | |||||| | || || |||||||| Sbjct 5901 TTTTGAACGGCGTTGAGTAGGAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATA 5960 Query 23794 AGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACAT 23853 || | ||||||||| || || |||||||| ||| || || ||||||||||| Sbjct 5961 AGCATGGAGTACATTTCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAG 6020 Query 23854 CTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATA 23913 | ||||||| | ||| || ||| | ||| | | | |||||||| || ||| Sbjct 6021 CGGGCTTCAGGGATTTGGACTTCAGTTCCAAAGTTGGCGACGAGGTTTTCGTTGACGATA 6080 Query 23914 CCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATCAGTT 23970 ||||| || ||||| ||||| || || | | || ||||||| |||||| ||||||| Sbjct 6081 CCATCGCTGGCAGCGAAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTT 6140 Query 23971 -GATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 | | | |||| ||| | | | | || | ||| | ||| ||||| ||||| ||||| || Sbjct 6141 AGCTTA-TTTTCCCAGTGTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAA 6199 Query 24030 ACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTAC 24089 ||| || || || |||||| |||| || || | || |||||| || | || Sbjct 6200 ACTGGCTTCAGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGGAC 6259 Query 24090 GAATCTAT 24097 |||||||| Sbjct 6260 GAATCTAT 6267 >seq7572 Length=6253 Score = 105 bits (116), Expect = 7e-18 Identities = 194/281 (69%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 23821 TTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTA 23880 |||||||| ||| || || ||||||||||| | ||||||| | ||| || ||| | Sbjct 1 TTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGACTTCAGTT 60 Query 23881 AAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGA 23940 ||| | | | |||||||| || |||||||| || ||||| ||||| || || Sbjct 61 CCAAAGTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGCGAGG 120 Query 23941 ACATATTTTATAAAATGTCTTTC---ATCAGTT-GATAATTTTTTCCAATCATTAATATC 23996 | | || ||||||| |||||| ||||||| | | | |||| ||| | | | | || Sbjct 121 ATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTA-TTTTCCCAGTGTTGAGTGTC 179 Query 23997 TTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAG 24056 | ||| | ||| ||||| ||||| ||||| ||||| || || || |||||| | Sbjct 180 GTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACATTTG 239 Query 24057 CCAAATATCATTATGTTGTATTGGAAATATTACGAATCTAT 24097 ||| || || | || |||||| || | |||||||||| Sbjct 240 CCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTAT 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521437487368600