Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq7711 114 9e-21 seq6735 114 9e-21 seq1303 114 9e-21 seq923 102 6e-17 >seq7711 Length=15848 Score = 114 bits (126), Expect = 9e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||| | |||| ||| || || ||||||||||||||||| |||| ||| ||| Sbjct 10648 AGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGA 10707 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || |||| ||||| || || || || | | |||||||||| ||| | |||||| Sbjct 10708 CCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCC 10767 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || || ||||| || || | || | |||| ||||| |||||| ||||| | ||| Sbjct 10768 TTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTA 10827 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 || || || || || | ||| || || ||||| |||||||| Sbjct 10828 ATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATGAT 10868 >seq6735 Length=1584 Score = 114 bits (126), Expect = 9e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||| | |||| ||| || || ||||||||||||||||| |||| ||| ||| Sbjct 995 AGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGA 1054 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || |||| ||||| || || || || | | |||||||||| ||| | |||||| Sbjct 1055 CCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCC 1114 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || || ||||| || || | || | |||| ||||| |||||| ||||| | ||| Sbjct 1115 TTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTA 1174 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 || || || || || | ||| || || ||||| |||||||| Sbjct 1175 ATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATGAT 1215 >seq1303 Length=22699 Score = 114 bits (126), Expect = 9e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||| | |||| ||| || || ||||||||||||||||| |||| ||| ||| Sbjct 4636 AGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGA 4577 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || |||| ||||| || || || || | | |||||||||| ||| | |||||| Sbjct 4576 CCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCC 4517 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || || ||||| || || | || | |||| ||||| |||||| ||||| | ||| Sbjct 4516 TTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTA 4457 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 || || || || || | ||| || || ||||| |||||||| Sbjct 4456 ATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATGAT 4416 >seq923 Length=21762 Score = 102 bits (112), Expect = 6e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| || | | |||| ||| || ||| || |||||||||||||| Sbjct 10353 TTGCATACCACCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTA 10412 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | ||| |||| || ||||| || || || || || | ||| ||||| || Sbjct 10413 GTCAGATAAAGTGCGGCCGTCTTCAAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTC 10472 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | |||||||| || || |||||||| | | | || ||||| | || Sbjct 10473 TGGTGGGATTCCTTCCTTGTCTTGAATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGA 10532 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | || || ||||| || || |||||||| ||||| |||||||| Sbjct 10533 TTCGACTTCAAGGGTGATAGTCTTACCTGTAAGGGTCTTTACGAAAATTTGCAT 10586 Score = 102 bits (112), Expect = 6e-17 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| || | | |||| ||| || ||| || |||||||||||||| Sbjct 10581 TTGCATACCGCCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTA 10640 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | ||| |||| || ||||| || || || || || | ||| ||||| || Sbjct 10641 GTCAGACAAAGTGCGGCCGTCTTCGAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTC 10700 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | |||||||| || || |||||||| | | | || ||||| | || Sbjct 10701 TGGTGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGA 10760 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTG 44343 ||| || || | || || ||||| || || || || || ||||| ||||||||| |||| Sbjct 10761 TTCGACTTCAAGGGTGATAGTCTTACCTGTTAGAGTTTTGACGAAAATTTGCATGTTGTG 10820 Query 44344 A 44344 | Sbjct 10821 A 10821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359956402169133