Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq923 179 9e-40 seq7711 161 2e-34 seq6735 161 2e-34 seq1303 161 2e-34 seq5539 141 2e-28 >seq923 Length=21762 Score = 179 bits (198), Expect = 9e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| ||||| || || |||||||| || || ||| |||||| Sbjct 10811 CAAATTTTCGTCAAAACTCTAACAGGTAAGACTATCACCCTTGAAGTCGAATCTTCAGAC 10752 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || || || || ||||| ||||||||||| || ||||||||| Sbjct 10751 ACAATTGACAACGTCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAA 10692 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || |||||||||||||| || | ||| | | || || ||| || Sbjct 10691 CGTCTCATTTTCGCAGGTAAACAGCTCGAAGACGGCCGCACTTTGTCTGACTACAACATC 10632 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || || | ||| | | |||||| Sbjct 10631 CAAAAAGAATCCACTCTCCACTTGGTTCTACGTCTCAGA 10593 Score = 170 bits (188), Expect = 5e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || ||||| || || |||||||| || || ||| |||||| Sbjct 10583 CAAATTTTCGTAAAGACCCTTACAGGTAAGACTATCACCCTTGAAGTCGAATCTTCAGAC 10524 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || || ||||| ||||| ||||||||||| || ||||||||| Sbjct 10523 ACAATTGACAACGTCAAGCAGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAA 10464 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || |||||||| ||||| || | ||| | | || || ||| || Sbjct 10463 CGTCTCATTTTCGCAGGTAAACAGCTTGAAGACGGCCGCACTTTATCTGACTACAACATC 10404 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || || | ||| | | |||||| Sbjct 10403 CAAAAAGAATCCACTCTCCACTTGGTTCTACGTCTCAGA 10365 Score = 120 bits (132), Expect = 7e-22 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| ||||| || || |||||||| || || ||| || ||| Sbjct 10355 CAAATTTTCGTCAAAACTCTGACAGGTAAGACCATCACCCTTGAAGTCGAATCTTCGGAC 10296 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || || || || ||||| ||||||||||| || ||||||||| Sbjct 10295 ACAATTGACAACGTCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAA 10236 Query 178044 CGACTTATCTT 178054 || || || || Sbjct 10235 CGCCTCATTTT 10225 >seq7711 Length=15848 Score = 161 bits (178), Expect = 2e-34 Identities = 187/251 (75%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 177889 TTTTAAGAAATATATAAAGTAAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAG 177948 |||||| ||| ||||| | || || |||| | || || || ||||| | || | Sbjct 10891 TTTTAAAAAA---ATAAATTTAGTATATCATGC---AGATCTTTGTCAAAACCTTAACCG 10838 Query 177949 GAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGA 178008 | ||||| || ||||||||||| ||| ||| ||| ||||||| |||||||||||||||| Sbjct 10837 GTAAAACTATTACCCTCGAGGTCGAATCCTCCGACTCCATCGAAAACGTCAAACAAAAGA 10778 Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 | || || || |||||||| ||||| || |||||| ||||||| ||||| || || || Sbjct 10777 TCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAAGACTTATTTTCGCAGGTAAGCAAT 10718 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | |||||||| | || || |||| || ||| ||||||| ||||| || || || | | Sbjct 10717 TGGAAGATGGTCGCACCCTCTCCGACTACAACATCCAAAAGGAATCTACCCTCCACTTGG 10658 Query 178129 TTTTGAGACTC 178139 | | |||||| Sbjct 10657 TCCTAAGACTC 10647 >seq6735 Length=1584 Score = 161 bits (178), Expect = 2e-34 Identities = 187/251 (75%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 177889 TTTTAAGAAATATATAAAGTAAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAG 177948 |||||| ||| ||||| | || || |||| | || || || ||||| | || | Sbjct 1238 TTTTAAAAAA---ATAAATTTAGTATATCATGC---AGATCTTTGTCAAAACCTTAACCG 1185 Query 177949 GAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGA 178008 | ||||| || ||||||||||| ||| ||| ||| ||||||| |||||||||||||||| Sbjct 1184 GTAAAACTATTACCCTCGAGGTCGAATCCTCCGACTCCATCGAAAACGTCAAACAAAAGA 1125 Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 | || || || |||||||| ||||| || |||||| ||||||| ||||| || || || Sbjct 1124 TCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAAGACTTATTTTCGCAGGTAAGCAAT 1065 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | |||||||| | || || |||| || ||| ||||||| ||||| || || || | | Sbjct 1064 TGGAAGATGGTCGCACCCTCTCCGACTACAACATCCAAAAGGAATCTACCCTCCACTTGG 1005 Query 178129 TTTTGAGACTC 178139 | | |||||| Sbjct 1004 TCCTAAGACTC 994 >seq1303 Length=22699 Score = 161 bits (178), Expect = 2e-34 Identities = 187/251 (75%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 177889 TTTTAAGAAATATATAAAGTAAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAG 177948 |||||| ||| ||||| | || || |||| | || || || ||||| | || | Sbjct 4393 TTTTAAAAAA---ATAAATTTAGTATATCATGC---AGATCTTTGTCAAAACCTTAACCG 4446 Query 177949 GAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGA 178008 | ||||| || ||||||||||| ||| ||| ||| ||||||| |||||||||||||||| Sbjct 4447 GTAAAACTATTACCCTCGAGGTCGAATCCTCCGACTCCATCGAAAACGTCAAACAAAAGA 4506 Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 | || || || |||||||| ||||| || |||||| ||||||| ||||| || || || Sbjct 4507 TCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAAGACTTATTTTCGCAGGTAAGCAAT 4566 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | |||||||| | || || |||| || ||| ||||||| ||||| || || || | | Sbjct 4567 TGGAAGATGGTCGCACCCTCTCCGACTACAACATCCAAAAGGAATCTACCCTCCACTTGG 4626 Query 178129 TTTTGAGACTC 178139 | | |||||| Sbjct 4627 TCCTAAGACTC 4637 >seq5539 Length=6842 Score = 141 bits (156), Expect = 2e-28 Identities = 159/209 (76%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||||| ||||| ||||| || || || || || ||| || || Sbjct 1190 CAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACTCTTGAAGTAGAATCTTCTGAT 1131 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| || |||||||| || || || || |||||||| ||||| || |||||| Sbjct 1130 TCTATTGAGAATGTTAAACAAAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAA 1071 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || |||||||| ||||| || |||||||| | || |||| ||||||| ||| | Sbjct 1070 CGCTTGATTTTCGCCGGTAAACAACTAGAAGATGGCCGTAC-CTTGTCCGATTACAACAT 1012 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||||||||| || || || |||| || Sbjct 1011 TCAAAAAGAATCTACTCTTCA-CTTGGTT 984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203611688676306