Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq603 104 5e-17 seq265 91.5 3e-13 >seq603 Length=32424 Score = 104 bits (114), Expect = 5e-17 Identities = 366/559 (65%), Gaps = 22/559 (4%) Strand=Plus/Plus Query 281475 CCTTTGAACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGATATCAAACGC 281534 ||||| || || |||||| ||| |||| || | || | |||| ||||| | Sbjct 23083 CCTTTAAAGCCTCGGTACCATGGTGTCATAGGTACTGGATCTTGTCCATTCATCAATCTT 23142 Query 281535 TTCACGTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTT 281594 |||| || ||||| || || | ||||| || | || | || || |||||| || Sbjct 23143 TTCAAATTATCTACAATATCATATGGATTGTAGTTTGGGACATTGGTGCTCCAACCAGTC 23202 Query 281595 CCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGT 281654 || ||||| ||||||||| || || || | || | | |||| || || | |||| Sbjct 23203 CCGATACCTTCTGAACCATTAACTAATATCATTGGAACTACGGGTATGTACCAATTTGGT 23262 Query 281655 TCAATTTTATCACCATCATCATACAAATACTTCAG--AAGG-TTATCATCTGTATCGACG 281711 |||| ||| | ||||| || | ||| | || ||| || ||| || || || Sbjct 23263 TCAACTTTTTTTCCATCGTCTTCAGTATAATCGAGTAAAGAATTGTCAGTTGAATTGAAT 23322 Query 281712 AAAACCTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCT 281771 | | | | | || || || | | ||||| || || | |||||| || ||| Sbjct 23323 ATAGT-TCTAGAAAGTTTGGA--CAATGTTGTGAAAATGTAACGTGCACTAGCAGCATCT 23379 Query 281772 TTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGG--CAA-CAACCAGTTAATGTTA 281828 ||||||||||| | || || ||||||||||| | || ||| ||| | |||| |||| Sbjct 23380 TTACCACCCTGTAATCTGGATCCAAACTGACCTTTGGGTTCAAGCAA--ATTTAA-GTTA 23436 Query 281829 TTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTG---AAGCGATACCTCA 281885 ||||| || || |||| | |||| | | ||| || || ||||||| ||| Sbjct 23437 TTGCTGCCAACAAAATCGTACGCCA---TAGCTATTATCGATTGAGTAAGCGATTGCTCT 23493 Query 281886 CCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTCT 281945 || || ||||| ||| | ||||| | || ||| ||| || ||||||||| | || Sbjct 23494 CCATGATGATATGCGGTTTGTTCAGAAATATATCCAGCTAATGCTGCTACCTTTATTTCA 23553 Query 281946 GATGTCAAGTTGCGTTTGAA--AGCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAAC 282003 | | |||||||| ||||| | | || || || ||||| ||| | || ||||| | Sbjct 23554 CCTTTTAAGTTGCGCTTGAAGCAACCAAAAATGAT--TTTTCTTTGGGTTGGTTTGAACC 23611 Query 282004 CATCAACGACAGACGGAAT 282022 ||||||| ||||| || || Sbjct 23612 CATCAACCACAGAAGGGAT 23630 >seq265 Length=13576 Score = 91.5 bits (100), Expect = 3e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || ||||| |||||| || || ||| | || || ||||| ||||||||||| || | Sbjct 3818 CTGATTGGTATGAACAGTGTCCTGATGTGCCAATATATCGAGTTCGTAGCCGATCGTTTG 3877 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 || || | | || | ||| || || || || | ||||| || | || ||||| Sbjct 3878 TTAGTCTCTTTGGGATTCGAAAAGCATTATAAGTCAATCAACCCATTCGACTTCATGGAT 3937 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 | ||||| | || || |||||||| ||||| || ||||| |||||||| || |||| | Sbjct 3938 ATGATTTCCATGCAGGGTAAGACCAATTTCTTTGAGAAGCGCGTCAGTGATTACCAGAAG 3997 Query 230626 CCTGGTGTGATGA 230638 | || ||||||| Sbjct 3998 GCCGGAGTGATGA 4010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057718324374110