Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq265 306 4e-78 >seq265 Length=13576 Score = 306 bits (338), Expect = 4e-78 Identities = 625/912 (69%), Gaps = 24/912 (3%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||| ||||| || ||||| |||| || || || || || ||||| || ||||| | Sbjct 4009 CATCACTCCGGCCTTCTGGTAATCACTGACGCGCTTCTCAAAGAAATTGGTCTTACCCTG 3950 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTA-AATC 23949 | || || | |||||||| ||| |||| ||| | ||||| || ||||| |||| Sbjct 3949 CATGGAAATCATATCCATGAAGTCGAATGGGTTGATTGACTTATA-ATGCTTTTCGAATC 3891 Query 23950 CCAATTCAGAA-ATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAA 24008 |||| ||| | ||| | ||| || || ||||| |||||| ||||| ||| Sbjct 3890 CCAAAG-AGACTAACAAACGATCGGCTACGAACTCGATATATTGGCACATCAGGACACTG 3832 Query 24009 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 24068 ||||| || || || || || | | || | ||| ||||| ||||| ||| Sbjct 3831 TTCATACCAATCAGAGAGCAGGGGAGGGAGTCGGTTAAAAACTCTTGCTCAATCACGACA 3772 Query 24069 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAA 24126 || || || | || ||| | ||||| | || || || |||| || || | Sbjct 3771 GCATCAGTGACGATGGATAGAATAGTTTCCTGGCTGGGCTTGTTAACAAGGCAT--TTGA 3714 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || | || || ||| || |||||||||| | ||| || ||||| |||| Sbjct 3713 ACAACAAGCAACCAAAGTCTGTGTGGAGTCCCTCGTCTCGGCAAATCAACTCGTTTGAAA 3654 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || | ||||||||| || |||||||| || |||||||| |||| ||||| || ||| Sbjct 3653 ATGTCAATCCGGGCATAAGACCACGCTTCTTGAGCCAAAAGATGGCAGCAAAAGACCCAC 3594 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCA-AAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 ||||| ||||| || || | ||| ||||| | ||| ||||| ||| |||| Sbjct 3593 TGAAGAAGATTCCCTCAACAAC-GCAGAAGGCGGCCAATCTCTCTCCGAAACTTTTGCTG 3535 Query 24306 ---TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 |||| ||||| | | ||||||| ||||||||||| | ||| || || | | Sbjct 3534 GAGTCATCGATCCATTCCAGTGCCCAATTAGCCTTCTTTTTGATACATGGGATATTTGCG 3475 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 | || ||||| || ||| | | || | | ||||||| | ||| ||||||||||| | | Sbjct 3474 ACTGCGTTAAAAAGGAAGTCTCTCTCCTCATTATCTTTGATATAGGTATCAATCAACATA 3415 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 |||||||| || |||||||| || || || || || ||||||||||||||| Sbjct 3414 GAGTACATTTCGCTGTGGATGTTTTCTATCATTATCTGGAAGCCATAGAAACATCTAGCC 3355 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGT 24540 || | ||||| ||||| | | ||| ||| | | |||||||| || |||||||| | Sbjct 3354 TCAGGGATCTGGACTTCAGTTCCAAA--GTTGGCAACCAAATTTTCGTTGACTATTCCAT 3297 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTT--ATAAAATATTTTTCGTCTGGTGTTAG 24598 |||||||||| ||||| || || | ||||| | |||||| || |||||| ||||| Sbjct 3296 CACTGGCTGCGAAAAATGC-AAGA-ATGTTCTTGATAAAAAATCTTTCGTTATCAGTTAG 3239 Query 24599 TTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 24655 |||||| ||| | | | | || | ||||| ||| |||||||| || ||||| || Sbjct 3238 TTTATTTTCCCAGTGCTGGGTGTCCTGAGATAAATCAACTTCTTCGACAGTCCAGAAGCT 3179 Query 24656 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || || |||||||||||||| | ||| || || || | | ||||| || | ||| || Sbjct 3178 GGCTTCGGCCTTTTTATACATTTGCCAAATCTCGTGCCACTTTATTGGGAACAGAACGAA 3119 Query 24716 TCTATTTGGATT 24727 || ||||| || Sbjct 3118 CCTGTTTGGGTT 3107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593663734408560