Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq356 93.3 3e-14 seq2250 84.2 2e-11 >seq356 Length=31527 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25111 TCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTG 25170 |||||||||| || ||||| ||||| | ||| |||||| |||||||||||||| | Sbjct 30988 TCAAGCAAAAGATCCAGGATAAGGAAGGAATCCCCCCAGATCAGCAAAGACTTATCTTCG 31047 Query 25171 CGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTA 25230 | || || |||||||||||| ||| | | || ||||| || || |||||||||| Sbjct 31048 CCGGTAAGCAATTGGAAGATGGACGTACTCTTTCTGACTACAACATCCAGAAGGAATCTA 31107 Query 25231 CTCTTCACATGGTGTT 25246 | || ||| |||| || Sbjct 31108 CCCTCCACTTGGTTTT 31123 >seq2250 Length=3934 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | || || | || || || || |||||| || ||| | | Sbjct 321 AATGCAGATTTTCGTTAAGACTCTAACTGGTAAGACAATTACCCTTGAGGTAGAATCTTC 262 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | || ||||||| || ||| ||||| ||||| | || ||| || Sbjct 261 TGACACTATTGACAATGTCAAGCAGAAGATTCAGGATAAGGAAGGAATCCCACCAGACCA 202 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || | ||||| || || || |||||| | |||||| | ||| | | |||||||| Sbjct 201 GCAGCGTCTTATTTTCGCTGGTAAACAACTTGAAGATGGCCGTACTTTATCTGATTACAA 142 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || |||||||||||||||||| |||| || || Sbjct 141 CATCCAGAAGGAATCTACTCTTCACTTGGTATTGCG 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410757763648958