Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20mucronatum_20[genbank_20GCA_5F001953115.1_202017-01-17] 7,797 sequences; 102,350,667 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq265 149 6e-31 seq356 91.5 2e-13 >seq265 Length=13576 Score = 149 bits (164), Expect = 6e-31 Identities = 411/616 (67%), Gaps = 33/616 (5%) Strand=Plus/Plus Query 116604 GGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGG 116663 ||||||| | ||||| ||| | | | || || |||| ||||| ||||||||||| | Sbjct 3117 GGTTCGTTCTGTTCCCAATAAAGTGGCACGAGATTTGGCAAATGTATAAAAAGGCCGAAG 3176 Query 116664 CGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACA-CGAGCGACTGGGAGCGC 116722 | |||||||| ||||| || || || | || |||||| | ||| ||||||| Sbjct 3177 CCAGCTTCTGGACTGTCGAAGAAGTTGATTTATCTCAGGACACCCAGC-ACTGGGA--AA 3233 Query 116723 TTGAAC-----GACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCA 116777 | ||| || ||||| | ||| |||||| || | || || |||||||| |||| Sbjct 3234 ATAAACTAACTGATAACGAAAGATTTTTTATCAAGAACATTCTTGCATTTTTCGCAGCCA 3293 Query 116778 GCGACGGCATCGTCAACGAGAATCTGGT--CGAGCGTTTCGCTCAGGAGGTGCAGGTGGC 116835 | || || || |||||||| ||| |||| | | | ||| | | || || ||| | | Sbjct 3294 GTGATGGAATAGTCAACGAAAATTTGGTTGCCAAC-TTTGGAAC-TGAAGTCCAGATCCC 3351 Query 116836 CGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 ||||| | || ||||| ||||| ||||| || || ||| | ||| |||||||| Sbjct 3352 TGAGGCTAGATGTTTCTATGGCTTCCAGATAATGATAGAAAACATCCACAGCGAAATGTA 3411 Query 116896 TTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGA-AG-CTCCGTTTGTTGAAC 116953 || | | || || || || | | ||||||| || || | || || ||| Sbjct 3412 CTCTATGTTGATTGATACCTATATCAAAGATAATGAGGAGAGAGACTTCCTT--TTTAAC 3469 Query 116954 GCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG-- 117011 || ||| | || || || ||||| ||||||| | ||||| ||| ||||||| Sbjct 3470 GCAGTCGCAAATATCCCATGTATCAAAAAGAAGGCTAATTGGGCACTGGAATGGATCGAT 3529 Query 117012 ----CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 || ||| | || ||||| ||| | ||| |||||| | || ||||| Sbjct 3530 GACTCCAGCA-AAAG-----TTTCGGAGAGAGATTGGCCGCCTTCTGCGTTGTTGAGGGA 3583 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 ||||||| || ||| || ||||| |||||||||||||| || || || |||||| Sbjct 3584 ATCTTCTTCAGTGGGTCTTTTGCTGCCATCTTTTGGCTCAAGAAGCGTGGTCTTATGCCC 3643 Query 117128 GGCCTGAC--TTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 || |||| ||||| |||||| | || | | | |||||||| || || ||||||| Sbjct 3644 GGATTGACATTTTCA--AACGAGTTGATTTGCCGAGACGAGGGACTCCACACAGACTTTG 3701 Query 117186 CCTGTTTGCTGTTCAA 117201 || ||| ||||||| Sbjct 3702 GTTGCTTGTTGTTCAA 3717 >seq356 Length=31527 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || || || ||||||||| |||| || || | || Sbjct 30912 ATGCAGATTTTTGTTAAAACCTTAACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 30971 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||||| ||||| |||| || | || || || || |||||| | || || Sbjct 30972 GATTCTATCGAAAACG-TCAAGCAAAAGATCCAGGATAAGGAAGGAATCCCCCCAGATCA 31030 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| |||| |||| ||| || || || |||| || | || || || |||||||| Sbjct 31031 GCAAAGACTTATCTTCGCCGGTAAGCAATTGGAAGATGGACGTACTCTTTCTGACTACAA 31090 Query 40869 CATCCAGAAGGA 40880 |||||||||||| Sbjct 31091 CATCCAGAAGGA 31102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515168985448720